<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01141

Description BnaC07g31280D protein
SequenceMDEKKAARALSVHLALPPPPPPTVAVAINGKKKSKYVAFWALEKFIPEGFSDFKLLYVRPPVTYIPTPMGNAISVTELRDDLVSAYKQELDWNTKEMLQPYKKMFDRRKVQVEILVLESNDPSAAIAQEIAGTGVTKLVIGMSLRGFFSRKIDMSSMIATAVPRFCTVYVVSKGKLASVRPSDSDASGSIRLETSSSTSGSTDSPRLPSEYQGFNSFVSEAQSRVSEMRSSGVAHMDTSCSETGQSDVSRERGMQIVLSGGGGGGGGNEGRKSNYNNNNESFSASFPMGEEAYHAMSWTSRWRDHEERRSIMSSSSSNNHELANMEWGAVVPENYSWVSHQASNMSDGRISFHSFNDNQVNLTFEIEKLRSELQHLQEMYAMAQNENVDASKKLNELNQRRFEESEKLEDLKEKEEAAKDTASKERQRYEEVMKEAEKVKELMVKEALHRREAEIKAEREAKEKDKLQASLVCPGIQYQHYSWEEITAATNDFSEDLKIGLGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLIYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDQNFVSKLGDVGLSTMVNQDDAASKLTVFKKTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAITHMVEEAIGDDAEFMALLDVKAGSWPISETRELAALGLCCTEMRRRDRPDLKDQIIPTLERLWKVVEKAQNSLSRTSLDPPSHFICPLLKGVMNQPCVAADGFTYDREAIEDWLRENDTSPVTNLPLPNKNLLANYTLYSAIMEWKANK
Length848
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.440
Instability index43.49
Isoelectric point5.81
Molecular weight94976.74
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01141
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.57|      21|     182|     278|     298|       2
---------------------------------------------------------------------------
  278-  298 (38.41/22.63)	NNESFSASFPMGEEAYHAMSW
  307-  327 (36.16/20.90)	ERRSIMSSSSSNNHELANMEW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.83|      26|      26|     390|     415|       3
---------------------------------------------------------------------------
  358-  380 (19.94/10.52)	.....NQVNL.TFEieklR....SE.LQHLQEMY
  390-  415 (42.62/31.48)	ASKKLNELNQRRFE....E....SEKLEDLKEKE
  417-  446 (33.27/22.84)	AAKDTASKERQRYE....EvmkeAEKVKELMVKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.70|      16|     118|     216|     231|       5
---------------------------------------------------------------------------
  216-  231 (27.32/15.98)	SFVSEAQSRVSEMRSS
  336-  351 (30.38/18.52)	SWVSHQASNMSDGRIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.26|      19|      41|     188|     206|       6
---------------------------------------------------------------------------
  188-  206 (32.55/20.27)	GSIRLETSSSTSGSTDSPR
  232-  250 (34.71/22.10)	GVAHMDTSCSETGQSDVSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.86|      25|      28|     454|     479|       7
---------------------------------------------------------------------------
  454-  479 (38.02/33.81)	EIKAEREAKEKDkLQASLVCPGIQYQ
  485-  509 (41.84/31.75)	EITAATNDFSED.LKIGLGAYGTVYK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01141 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NVDASKKLNELNQRRFEESEKLEDLKEKEEAAKDTASKERQRYEEV
2) SDSDASGSIRLETSSSTSGSTDSPRLPSEYQG
3) VSEMRSSGVAHMDTSCSETGQSDVSRERGMQIVLSGGGGGGGGNEGRKSNYNNNNESFSA
387
182
225
432
213
284










Molecular Recognition Features






MoRF SequenceStartStop




NANANA