<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01140

Description BnaA09g30010D protein
SequenceMDQSQRIVAAPSSSRSYQFHPARAAIVDLFNLYLGRGTRQKPDEPIRDPPNKSQKRVHAPVRDLPPRNDQFIADFEKLQTQFNDPDQFRAITESVVISMVLQCSNHAPRAEFLLFTLRTLCRIGYVNWDTFLPSLLSSVSAAEASLSQAATTAATSSQSLLPVGVGSPGNEPTAFSKSLDSVQQIDMRNSSQRVRAAAVNSLRQLSCKIILIGVEFNLKPATHSEIFQCMMSWLVNWDKSDDSAGKRWRSEKSLAEWLRSCLEVIWLLVDVGKSKIPFYELLRSGLQFVENIPDDEALFALVMEIHRRRDAMAMHMLMLDQHLHCPTFGTHRISSQPTANVSAEAVAHLRYSPITYPSVLGEPLSGEDLAMSVPQGSLDWERAVRCIKHAIRTTPSPEWWKRVLVVTPCYRPSAQAGPIPGAVFTSEMICEAIIDRIVELLKLTNSDANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGDDNHILRTNHVTWLLAQIIRVELVMTALNSDPKKAETTRKILSFHREDRTDPNNPQSVLLDFVSSCQNLRIWSLSATTRAYLNNEQLLKGKQIDEWWRSQVMFLVSGERMMDYMNLDDRSIGMFWVVSYTMAQPACETVINWLSSAGVAELLPGVTPNERTMMMQEVSPLPMSLLSGFSMNLCLKLALQMEEALFVSQLVVPSIAMVETYTRLLLISPHSMFRSHFTQIAQRNASLLSKPSVSLLVLEILNYRLLPLYRYQGKSKSLLYDVTKILSALKAKRGDHRVFRLAENLCMNLILSLRDFFSVKRDQKGPTDFTETLSRITIMTLAITIKTRGIADADHMVYLQTMLEQVLATSQHTWSEKTLRHFPSLLRDALIGRVDKRGLSIQAWQQAETTVLNQCTQLLSPAAEPAYVTTYLSHSFPQHRQYLCAGACLLMQGNPDKINSANLARVLREVTPDEVTANIYTFVDVLLHNVHLDLQRGHGLEEILNKNDANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIARRILERPELLQRINVFCVNRGNPEHWLCTQVFKRNELQKALGNHLAWKDNRYPTFFDDIAARLLPVIPLVVYRLIENNAMDTADKILTAYSNFLAYHPFRFTFVRDILAYFYGHLPGQLVVKILRVLGLSKIPFSESFPQYITHTGPATCPPLDYFANLLLNLVNNVIPPLSSSSSNCSSRSGSMADILNTSARPPHGKTPGASQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSPAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSSVLPTSPSGGSTDSMGTSRSSCMNTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPEFHTQLYMEASRVTRETWWLSDRKRSQGEVDSAVGYALMDPTWAAQDNTSTAIGNVVALLHAFFSNLPQEWLDGTHLIIKNIRPVTSVAMLRVAFRIMGPLLPRLANAHALFNKTLALLLSTMVDVFGKNSQTPVPVEASQIADLIDFLHHVVHYEGQGGAVQSSSKPRADTLALIGRAADSLRPDVQHLLSHLRTDPNSSIYAAAHQNTAKTNTS
Length1571
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.051
Instability index43.22
Isoelectric point7.27
Molecular weight175616.86
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01140
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.18|      35|     365|    1038|    1097|       1
---------------------------------------------------------------------------
 1059- 1097 (59.60/ 7.97)	GNHLAWKDNRYPTFFD..DIAARLL.PVIPlvvyRLIENNAM
 1429- 1466 (50.58/34.99)	GTHLIIKNIRPVTSVAmlRVAFRIMgPLLP....RLANAHAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.56|      36|     365|     837|     896|       4
---------------------------------------------------------------------------
  128-  168 (54.54/27.39)	WD....TFLPSLLSSV...SAAEASLS.....QAATTAATSSQSLLpvgvgSP
  848-  895 (49.02/55.30)	WSektlRHFPSLLRDAligRVDKRGLSiqawqQAETTVLNQCTQLL.....SP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.06|      15|     181|     266|     301|       5
---------------------------------------------------------------------------
  266-  285 (20.48/14.43)	WLLVdvgkSKIPFYeLLRSG
  454-  468 (29.58/ 6.89)	WLVF....SDIFFF.LIKSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     216.11|      68|     542|     946|    1017|       6
---------------------------------------------------------------------------
  946- 1017 (103.04/59.81)	PDEvTANIYTFVDVLLHNVHLDLQRGHGLEEILNKNDaNLAFFFWTHEMLPLDI.FLLALIdRdDDPHALIIA
 1491- 1559 (113.07/52.32)	PVE.ASQIADLIDFLHHVVHYEGQGGAVQSSSKPRAD.TLALIGRAADSLRPDVqHLLSHL.R.TDPNSSIYA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     181.74|      58|     796|     542|     612|       9
---------------------------------------------------------------------------
  549-  612 (100.82/84.58)	SSCQNLRIWsLSATTRAylnneQLLKGKQIDEWW.....RSQ..V........MFLVSGERMMD..YMNLDDRSIGMFWVV
  619-  665 (52.31/23.47)	PACETVINW.LSSAGVA.....ELLPGVTPNE.......RTM..MmqevsplpMSLLSGFSM...................
 1373- 1412 (28.61/ 8.30)	................................WWlsdrkRSQgeV........DSAV.GYALMDptWAAQDNTSTAIGNVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.92|      16|     110|     666|     681|      15
---------------------------------------------------------------------------
  666-  681 (27.27/18.71)	NLCLKLALQMEEALFV
  778-  793 (28.65/20.08)	NLCMNLILSLRDFFSV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01140 with Med23 domain of Kingdom Viridiplantae
Unable to open file!