<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01139

Description BnaA08g25530D protein
SequenceMINSDQVSRSHLPEVQKPKAPQTNWSEHANAFEDPSSRTKHLSSGFLYALESQKPRKSSDMAARSIAFPSVNAHTLAPPQIAKAWRALSSLSLNKTYLRPGITPPVDDGGTNGSYSARERSTVKVTCSTDGSFYSNNQQNQSQMGVPGTGRSFHSFPPPVPGDGKNFAEKFRRINDETREPETSSAHLNGVEKPFKNSTFAAEQLGSGEACLDEIDDDILQNIDVDQIMMEHYQSTSTPPSSVSSLPSRTPPVDRSASRREEECSLPPELCSNCSHGIKLGLCPEASTHLEQMKNMLIAISNELLDDDTDLSPDRIQELRQERLLLKKQIQQLEDHIRDKEKQKSQFLSSTATRASQYETPKSTNLRFDHPQTDSRAHFNEQGRYASDSWNMPKDSSFSVDRYGLSSAPVEREQYVPRIIEVTYTEGSNDQKWSSRDFPWTRKLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMNLLQANIPATSLSAGMEWSEQLKIFQELSSEHSKYKLLYVTPEKVAQSDSLLRHLDNLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLLYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRNDCEKVAQKLQEFGHKAAFYHGSIEPTQRALVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYGYGDYIRVKHMISQVGVEQSPMANGYNRVASSGRLLETNTENLLRMVRYCENEVDCRRFLQLVHFGEKFDSTNCKRTCDNCSSSQSLIDKDVTLITRQLVELVKQTGERFSSSHILEVYRGSLNQMVKKHRHETLQFHGAGKHLTKLEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNKSKAASLFSGSQTIMMRFPSSVKVLKPCKAAPTPAKAPLVSADAPPEDVNLSAIMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQMSKKIPRTKEELLEINGLGKAKVLKYGERLLETIESTVNEYYGTSKKEESMISPDSGKRRRDENISPNVTEEDDDFAESSSQSCKKTVRSKSSEVLHGECVAGDGVGMVMEKLDFDFEDEDGSEIRPEGRVLPW
Length1183
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.542
Instability index52.65
Isoelectric point6.73
Molecular weight132590.25
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01139
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     471.02|     133|     141|     781|     921|       1
---------------------------------------------------------------------------
  682-  768 (86.19/58.68)	.....................................................YCLSRNDCEKVAQkLQEFGH..KaaFYHGSIEPT......QRALVQKqwskdEVNIIcaT..VAFGM.GINKPDVRF.......VIHHSLPKSIEG...YHQECGR...AG
  781-  921 (212.95/189.68)	GYGDYIRVKH..MISQVGVE...QSPMangYNRVASsgrLLETNTENLLRMvrYCENEVDCRRFLQ.LVHFGE..K..FDSTNCKRTCDNCSSSQSLIDK.....DVTLI..T..RQLVE.LVKQTGERFSSSHILEVYRGSLNQMVKK...HRHETLQFHGAG
  925- 1068 (171.88/131.49)	TKLEVSRILHylVTEDILVEdvrKSDM...YGSVSS...LLKVNKSKAASL..FSGSQTIMMRFPS.SVKVLKpcK..AAPTPAKAPLVSADAPPEDVNL.....SAIMY..TalRKLRTlLVKEAPDGVMAYHIFG..NATLQQMSKKiprTKEELLEINGLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     340.54|      72|      85|     155|     226|       2
---------------------------------------------------------------------------
   18-   76 (65.59/35.06)	..............PKAP..QTNWSEHANAFEDpSS......RTKHLSSGFLYALEsqKPRKSSDMAARSIA......FPSVNAHTL......
   78-  138 (62.74/33.20)	..............PP......QIAKAWRALSS.LSlnktylRPGITPP.....VD..DGGTNGSYSARERSTVKvTC..STDGSFYSNNQ..
  155-  226 (119.74/70.30)	SFP...........PPVPGDGKNFAEKFRRIND.ET......REPETSSAHLNGVE..KPFKNSTFAAEQLGSGE.ACLDEIDDDILQNIDVD
  237-  310 (92.47/52.55)	STPpssvsslpsrtPPVDRSAS......RREEE.CS......LPPELCSNCSHGIK..LGL..CPEASTHLEQMK.NMLIAISNELLDD.DTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.16|      13|      30|     358|     370|       3
---------------------------------------------------------------------------
  358-  370 (23.56/13.32)	YETPKSTNLRFDH
  390-  402 (24.61/14.25)	WNMPKDSSFSVDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     208.91|      68|     138|     446|     524|       5
---------------------------------------------------------------------------
  446-  524 (99.26/93.43)	VSNkkvFGnHSFRPNQRE..IINATMSGSDVFVLMPTGggkslTYQLPALICQGITLVisPLVSLIQD.QIMNLLQANIPAT
  589-  659 (109.65/72.26)	VSQ...WG.HDFRPDYQSlgILKQKFPNIPVLALTATA.....TASVKEDVVQALGLV..NCVVFRQSfNRPNLLYSVVPKT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01139 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IDVDQIMMEHYQSTSTPPSSVSSLPSRTPPVDRSASRREE
2) MINSDQVSRSHLPEVQKPKAPQTNWSEHANAFEDPS
3) TCSTDGSFYSNNQQNQSQMGVPGTGRSFHSFPPPVPGDGKNFAEKFRRINDETREPETSSAHLNGVEKPFKNSTF
4) YGTSKKEESMISPDSGKRRRDENISPNVTEEDDDFAESSSQSC
223
1
126
1091
262
36
200
1133










Molecular Recognition Features






MoRF SequenceStartStop




1) EIRPEGRVLPW
2) GFLYALE
3) LDFDF
1173
45
1162
1183
51
1166