<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01134

Description BnaA09g02690D protein
SequenceMEGSSNEQGGDSLTNDWRTYHEPGLRERVIYEIVKKLKKCCHQPSNENDIKKAAIKYEAKIYGMAKDKDAYLGKICRKVFSSHSHFRAQEQSLPTSLPYTQTPTSQSNLNVPESSGLPTQVPLTVSAAQNLKIQMSEEGVHSNLLPGHPQREIQQLESENLISQLMNGQDTQKNHPQNKGEEQEQTTPRVSTSQQNNMASFNVHGPSLLGTQSQEVEQSQPLMLQYLNDVHDWREETYHKIKVLKEKYGLVLSTFFKSISDKLREIDSLRQQNMPVEWLTASKATLEQVLAFLNVCKSSVSEFHRDKFSLHEEKVLRFIEYHHLNVTRRAMKQQQVYLPPSHTHQTRPRMEPEDENSPMSTAAQEHLPPEPITERPIDRLIKAIQSASPESLAQSVSEMRSVISLSEMIAGLVNTIGGSRARLVEDLSERTRFRAQQGDTNHTKRFKRSVTAISSSKVNKIEPSYALLQEIMEINGRLVETVVSICNEDVCPSEVTSGTVVVTCDYVPVAVSATFKALYNSGYISQIQPLRLLVPENYPSSPILLEKVIFDTASDHKFEDLSARARSRFSLSMKEAMSLKEIAKVWDECARATMLEYAERHGGGTFSSKYGRWESVLA
Length618
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.588
Instability index56.78
Isoelectric point6.60
Molecular weight69864.13
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01134
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.82|      11|      19|     397|     407|       1
---------------------------------------------------------------------------
  397-  407 (18.62/13.12)	SEMRSVISLSE
  419-  429 (18.21/12.67)	SRARLVEDLSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.67|      17|      24|     134|     150|       2
---------------------------------------------------------------------------
  134-  150 (33.33/20.35)	QMSEEGVHSNLLPG......HPQ
  155-  177 (25.34/13.89)	QLESENLISQLMNGqdtqknHPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.83|      20|      23|      90|     111|       3
---------------------------------------------------------------------------
   90-  111 (31.53/22.91)	EQS.LPTSLPYtqTPTSQSNLNV
  113-  133 (28.30/14.31)	ESSgLPTQVPL..TVSAAQNLKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.74|      13|      17|     323|     339|       4
---------------------------------------------------------------------------
  323-  335 (22.54/20.83)	HLNVTRRAMKQQQ
  342-  354 (25.20/10.67)	HTHQTRPRMEPED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.81|      13|     217|      16|      28|       5
---------------------------------------------------------------------------
   16-   28 (28.45/19.02)	DWR..TYHE.PGLRER
  232-  247 (17.36/ 9.05)	DWReeTYHKiKVLKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.70|      13|      17|     481|     495|       6
---------------------------------------------------------------------------
  481-  495 (20.47/19.62)	TVVSICneDVCPSEV
  499-  511 (24.24/15.46)	TVVVTC..DYVPVAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.61|      15|      24|     190|     204|      10
---------------------------------------------------------------------------
  190-  204 (26.81/19.03)	VSTSQQNNMASFN.VH
  216-  231 (22.80/15.06)	VEQSQPLMLQYLNdVH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01134 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KQQQVYLPPSHTHQTRPRMEPEDENSPMSTAAQEHLPPEPITERP
2) RAQEQSLPTSLPYTQTPTSQSNLNVPESSGLPTQVPLTVSAAQNLKIQMSEEGVHSNLLPGHPQREIQQLESENLISQLMNGQDTQKNHPQNKGEEQEQTTPRVSTSQQNNMASFNVHGPSLLGTQSQ
332
87
376
214










Molecular Recognition Features






MoRF SequenceStartStop




1) IKKAAIKYEAKIY
50
62