<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01132

Description BnaC08g14630D protein
SequenceMINSNQVSRSHLPEVEKPKGPQTNWSDHANALEDPSSRTKHLSSGFLYAIESQKPRKSRDMAARSIAFPSVNAHTLAHPQIAKAWSALSSLSLNKTYLRPGITPPVDDGGTNGSYSARERSTVKVTCSTDGSFYSNNQQNQSQMGVPGTGRNFHSFPPPVPGDGKIFAEKFPRINDEAREPETSSAHLNGVEKPFRSSAFAAEQLGSGEACLDEIDDDILQNIDVDQIMMEHYQSTSTPPPSVSSLPSRAPPVDRSASRREEESCLPPELCSNCSHGIKLGLCPEASTHLEQMKNMLIAISNELLDDDTDLSPDRIQELRQERLLLKKQIQQLEDHTRDKEKHKSQFLSSTATRASQYETPKSTNLRFDHPQTDSRAHFNEQGRYASDSWNMPKDSSFSVDRYGLSSAPVEREQYVPRIIEVTYTEGSNDQKWSSRDFPWTRKLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWSEQLKIFQELCSEHSKYKLLYVTPEKVAQSDSLLRHLDNLNSCGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLLYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRNDCEKVAQKLQEFGHKAAFYHGSIEPTQRALVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYGYGDYIRVKHMISQVGVDQSPMANGYNRVASSGRLLETNTENLLRMVRYCENEVDCRRFLQLVHFGEKFDSTNCKRTCDNCSSSQSLIDKDVTLITRQLVELVKQTGERFSSSHILEVYRGSLNQMVKKHRHETLQFHGAGKHLTKLEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNKSKAASLFSGSQTIMMRFPSSVKVLKPCKAAPTPAKAPLVSADAPPEDVNLSAIMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQMSKKIPRTKEELLEINGLGKAKVLKYGERLLETIESTVNEYYGTSKKEESMISPDSGKRRRDENISPNVTEEDDDFAESSSQSCKKTVRSKSSEVLHGECVDGGGVGMVMEKLDFDFDFEDEDGSEIRPEGRVLPW
Length1185
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.524
Instability index51.77
Isoelectric point6.54
Molecular weight132620.33
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01132
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     468.02|     129|     143|     780|     922|       1
---------------------------------------------------------------------------
  682-  769 (89.59/58.15)	.................................................YCLSRNDCEKVAQkLQEFGH..KaaFYHGSIEPT......QRALVQKqwskdEVNIIcaT..VAFGM.GINKPDVRF.......VIHHSLPKSIEG...YHQECGR...AGR
  780-  922 (201.12/190.26)	YGYGDYIRVKhmisqvGVDQSPMangYNRVASsgrLLETNTENLLRMvrYCENEVDCRRFLQ.LVHFGE..K..FDSTNCKRTCDNCSSSQSLIDK.....DVTLI..T..RQLVE.LVKQTGERFSSSHILEVYRGSLNQMVKK...HRHETLQFHGAGK
  935- 1069 (177.31/132.94)	YLVTEDILVE......DVRKSDM...YGSVSS...LLKVNKSKAASL..FSGSQTIMMRFPS.SVKVLKpcK..AAPTPAKAPLVSADAPPEDVNL.....SAIMY..TalRKLRTlLVKEAPDGVMAYHIFG..NATLQQMSKKiprTKEELLEINGLGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     173.52|      59|      85|     155|     226|       2
---------------------------------------------------------------------------
  155-  226 (84.89/76.37)	SFPPP....VPGdgkifaeKFPRINDEARE........PETSSAHLNGVE...KPFRSSAFaaEQLgsgEACLDEIDDDILQNiDVD
  237-  310 (88.63/49.66)	STPPPsvssLPS.......RAPPVDRSASRreeesclpPELCSNCSHGIKlglCPEASTHL..EQM...KNMLIAISNELLDD.DTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.42|      66|     141|     446|     522|       3
---------------------------------------------------------------------------
  446-  522 (96.10/100.77)	VSNkkvFGnHSFRPNQRE..IINATMSGSDVFVLMPTGggkslTYQLPALICQGITLVisPLVSLIQD.QIMNLLQANIP
  589-  657 (106.32/77.26)	VSQ...WG.HDFRPDYQSlgILKQKFPNIPVLALTATA.....TASVKEDVVQALGLV..NCVVFRQSfNRPNLLYSVVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     268.83|      93|     303|      32|     143|       4
---------------------------------------------------------------------------
   32-  143 (129.14/117.16)	LEDPS.SRTKHlSSGFLyaiESQKPRKSRDMAARSIAF....PSVN..AHTLAHPQIAK.AWS..ALSSLSLNktylRPGI.TPPVDdggtNGSYSARersTVKVTcSTDGsfySNNQQNQSQ
  333-  436 (139.69/78.63)	LEDHTrDKEKH.KSQFL...SSTATRASQYETPKSTNLrfdhPQTDsrAHFNEQGRYASdSWNmpKDSSFSVD....RYGLsSAPVE....REQYVPR...IIEVT.YTEG...SNDQKWSSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01132 with Med34 domain of Kingdom Viridiplantae
Unable to open file!