<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01131

Description BnaA09g02710D protein
SequenceMEGTSSWKPNEQGGDSLANDWRSQHEPDLRKKVIVAIVERLKICFSRHITDTITKSACTFEEKIYGMAKDKTPTNQPWLSQSNIQSKFNTPESSGLPIQSPMTVSAAQNLNVQMGERVESSLGPGPQRQIQGRQQQLQKPQQQQLRSNTMYQHHRNRQQQSLLPHHRSSSPIKLSFPQSSALSSHQQQMAVPSREHKQLERKYHISQLMNGQDTQQNHLTSPQNNGDKQRISQQNNTTSFNVHGSKLLGAQGQEVEKSQPLMLQHLNETQRFQAADCFVAFQDSTSKTLNPSGGDWREETYQKIKALKDKYIHILSELFQKLSYKLQEIDSLPQQNMMPSDPRVENLRATIARLGQVLVYLNVSRSSVSEQHRDKFSALESLALKFTKHQREKEEQQQVHIPPPQIHQTALQTQSGQVHASQTAAPHSSQTRPRIEPKDVNKVMSSSGNVVVHSPKQNPPSNQREVVHSNISQAQSSMFQKKQFHHLPKQEQPSASSPQMQKNNSSPQLVEQQTLPTPTNKTEAQEHPLVTLSPEPPSERPIDRLIKAVSQEVIYRLFKFSFSILSLIKVLMFVCVALLVSIIITRIFGTISK
Length593
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.797
Instability index66.04
Isoelectric point9.65
Molecular weight67237.10
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01131
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.29|      13|      17|     503|     518|       1
---------------------------------------------------------------------------
  503-  518 (19.16/17.45)	NNSSPQLVeqqTL.PTP
  523-  536 (20.13/ 9.45)	EAQEHPLV...TLsPEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      70.76|      14|      21|     215|     228|       2
---------------------------------------------------------------------------
  215-  228 (24.59/ 9.06)	QQNHLTSPQNNGDK
  233-  246 (22.11/ 7.47)	QQNNTTSFNVHGSK
  397-  410 (24.07/ 8.73)	QQVHIPPPQIHQTA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.73|      17|      23|     427|     449|       3
---------------------------------------------------------------------------
  427-  446 (25.54/24.45)	HSSQTRPriePKDVNKVMSS
  453-  469 (32.19/13.29)	HSPKQNP...PSNQREVVHS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.95|      23|      38|     116|     141|       8
---------------------------------------------------------------------------
  116-  141 (32.17/23.94)	ERVESSLGPgPQRqiQGRQQQLQKPQ
  156-  178 (41.77/20.43)	NRQQQSLLP.HHR..SSSPIKLSFPQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01131 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDKTPTNQPWLSQSNIQSKFNTPESSGLPIQSPMTVSAAQNLNVQMGERVESSLGPGPQRQIQGRQQQLQKPQQQQLRSNTMYQHHRNRQQQSLLPHHRSSSPIKLSFPQSSALSSHQQQMAVPSREHKQLERKYHISQLMNGQDTQQNHLTSPQNNGDKQRISQQNNTTSFNVHGSKLLGAQGQEVEKSQPLMLQHL
2) LESLALKFTKHQREKEEQQQVHIPPPQIHQTALQTQSGQVHASQTAAPHSSQTRPRIEPKDVNKVMSSSGNVVVHSPKQNPPSNQREVVHSNISQAQ
3) SMFQKKQFHHLPKQEQPSASSPQMQKNNSSPQLVEQQTLPTPTNKTEAQEHPLVTLSPEPP
69
379
477
266
475
537










Molecular Recognition Features






MoRF SequenceStartStop




NANANA