<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01127

Description BnaA09g05690D protein
SequenceMEEKKASSDLSLPPPPPPVIAVAINGKKKSKYPIFWALEKFIPEGFSDFKLLYVRPPITHIPTPMGNAIMITELRHNIVSAYLKEVDRKTNEMLLPYKKMFESRKARVEILVMESDEPADAIAEEIAGTGVTKLVIGTSLRGFFSRKIEMSSMIATAVPSFCTVFVVSKGRLASMRPSDSNASVSITCERSSTTSGSTDSPRAPSESQDSVSEALSLSEVVQMDTSSSEMEQSEVSTGRGMEIVQRGDEGKKRINRNESFGASFPMGVEAYNAMSWTSRWRDHEERREVVSSSSSNSHEIANMDWRAVAPESENSSLGSQQASNMSEGLFSVNSMTDNQANLSFEIERLRAELKHVEEMHAMTQTETIDASEKLTDLNQRKFEESEKLVELKEEEEVAKDTASKEKERYEEAMKEAEKVKESMMHEALHRREAEIKGERDAKEKDKLQASLVSPGIQYQHYSWEELAAATSDFSEDLKIGIGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMENGSLDDRLMLVNDTSPIPWFERFRIALEVASALVFLHKCKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDADSKMTVLKKTSPVGNLCYIDPEYQRTGLISPKSDVYSLGVVILQLITAKPAIAITHIVEEAIGDDAEFMGLLDVKAGAWPVSETRELAALGLRCTEMRRRDRPDLKDEIIPALERLRKVVDKYQNSLSRTPSGPPSHLICPLLKGVMNEPCLAADGYTYEREAIDDWLREKDTSPVTNLPLPNKNLLANYTLYSAIMEWKKSNKQ
Length830
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.440
Instability index47.58
Isoelectric point5.45
Molecular weight92862.57
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01127
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.94|      20|      21|     205|     224|       1
---------------------------------------------------------------------------
  178-  197 (30.30/15.36)	SD.SNASVSITCERSSTTSGS
  205-  224 (31.66/16.32)	SE.SQDSVSEALSLSEVVQMD
  228-  245 (17.98/ 6.62)	SEmEQSEVSTGRGM.EIVQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.67|      35|      37|     322|     358|       2
---------------------------------------------------------------------------
  322-  358 (49.77/50.77)	ASNMSEGLFSVNSMTD.NQANLSfEIERLrAELKHVEE
  361-  396 (52.90/41.43)	AMTQTETIDASEKLTDlNQRKFE.ESEKL.VELKEEEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.15|      61|     234|     500|     564|       3
---------------------------------------------------------------------------
  500-  564 (93.56/82.48)	KVLHAGEtQLSKQFDQELEILSKI.RHP..HLV..LLLGACPErGCLV...YEYmENGSLDDRLMlVNDTSPI
  733-  801 (91.59/62.01)	EIIPALE.RLRKVVDKYQNSLSRTpSGPpsHLIcpLLKGVMNE.PCLAadgYTY.EREAIDDWLR.EKDTSPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.11|      20|      28|     404|     423|       4
---------------------------------------------------------------------------
  404-  423 (32.79/23.14)	KEKE.RYEEAMKEAEKVKESM
  431-  451 (27.32/17.92)	REAEiKGERDAKEKDKLQASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.67|      40|     528|      36|      80|       5
---------------------------------------------------------------------------
   36-   80 (67.78/54.46)	WaLEKF.IP.EGFSDFKLLY.VRP.PITHIPTPMGNAImiteLRHNIVS
  566-  609 (58.89/34.88)	W.FERFrIAlEVASALVFLHkCKPrPIIHRDLKPGNIL....LDHNFVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.54|      17|      24|     280|     299|       6
---------------------------------------------------------------------------
  280-  299 (26.35/22.74)	WRDHEERREvvsSSSSNSHE
  305-  321 (30.19/17.77)	WRAVAPESE...NSSLGSQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.40|      11|      21|     143|     153|       7
---------------------------------------------------------------------------
  143-  153 (19.91/14.12)	FFSRKIEMSSM
  165-  175 (18.49/12.56)	FVVSKGRLASM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01127 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QRKFEESEKLVELKEEEEVAKDTASKEKERYEEAMKEAEKVKESMMHEALHRREAEIKGERDAKEK
2) RDHEERREVVSSSSSNSHEIANMDWRAVAPESENSSLGSQQASNMSEGLFSVNS
3) SDSNASVSITCERSSTTSGSTDSPRAPSESQDSVSEALSLSEVVQMDTSSSEMEQSEVSTGRGMEIVQRGDEGKKRINRNES
379
281
178
444
334
259










Molecular Recognition Features






MoRF SequenceStartStop




1) YSAIMEW
818
824