<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01124

Description BnaA09g20140D protein
SequenceMNQPQVSLGNSTGGDAKEEEEEEEEEVNQHQLEEEEEAESRDQIVVEEKSDDQMEVDPVSPATVFCVTLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKAIPPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGAANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYKWLSSNSKTSSGTNAKSTFEEKFLSQSSESSGFLLLISCVLLYIDIFRTIHITVSFFNIPYIYVLIFISIYVTRSVQHVTLSMLHKVKEIAGEYYEGLDSYKSWSQVIYVYIMDKTIGPFSRMKRKLSTAPTRNKSE
Length352
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.09
Grand average of hydropathy-0.231
Instability index57.86
Isoelectric point5.24
Molecular weight39767.63
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01124
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.65|      10|      21|     216|     225|       1
---------------------------------------------------------------------------
  216-  225 (18.57/10.96)	KWLSSNSKTS
  237-  246 (17.07/ 9.56)	KFLSQSSESS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.93|      19|      23|     141|     163|       2
---------------------------------------------------------------------------
  141-  163 (29.64/22.96)	VAD.SPRDSVqfieWS.PTSCPRAL
  165-  185 (25.29/11.41)	IANfHGRITI....WTqPTQGAANL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.22|      10|      26|     263|     272|       4
---------------------------------------------------------------------------
  263-  272 (18.30/14.61)	RTI.HITVSFF
  289-  299 (12.92/ 8.21)	RSVqHVTLSML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.63|      10|      26|      18|      27|       5
---------------------------------------------------------------------------
   18-   27 (15.71/10.91)	EEEEEEEEEV
   47-   56 (16.92/12.29)	EEKSDDQMEV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01124 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNQPQVSLGNSTGGDAKEEEEEEEEEVNQHQLEEEEEAESRDQIVVEEKSDDQ
1
53










Molecular Recognition Features






MoRF SequenceStartStop




1) EEVNQH
2) MNQPQV
3) RMKRKLS
25
1
337
30
6
343