<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01122

Description BnaA02g11330D protein
SequenceMDFFFKTSYLEPKPAVPVSTGSNHASPSQSLTVAVAISGSTKSKNVLKWALKKFASEKNIIFKLIHIHPKLTSIPTPSGNIVSITEAPEDVAATYRRQVMEETKETLLKPYKKMCERKKVVVELLVLESNSVAVAITRDINQHLISRLVIGRSCNVGLYGNNDITAKISHYVSNLCTVYVVSKGVYILSKEKLPSASDTERNEILRDTGSERSSSCSSGSGTISDAMSSNALKSKSLGLSNKRLQHLPTIVRGVSGRVETDSDETRSVCSDAPEEVSKIETSYTFDDRKDGNSHISSNPEYENVTDQGEDYFTDDQETLQEITKLRDELRQAQEMYAVAQVETLDASRKLKELKLEELTIKGQGTKGLAQKETQQKRMEEKETAQRREAEMKVAHEAKEKEKLVESCLVAPKLAPKVQYQEFTWEEISTATSSFSQDLKIGEGAYGAVYKCSLHHTVAAVKVLHSPESNLSKQFDQELEILSKIRHPHLVLLLGACPERGALVYEYMENGSLEDRIFQVNNSQPLPWFVRFRIAWEVASALVFLHKSKPTPIIHRDLKPANILLDRNFVSKVGDVGLSTMIQTDLLSTKFTMYKQTSPVGTLCYIDPEYQRTGMLSPKSDVYALGMIILQLLTAQPAIALTYTVEIAMENNDDDELIQILDKKAGDWPIEETRQLAALALHCTEIRAKDRPDLEKQILPVLESLKKVAEKARKTIASAPKQPPSHFICPLLKDVMKDPCIAADGYTYDRKAIEKWMEDHRSSPVTDSPLENMTLLPNHTLHAAIVEWCRRNQ
Length792
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.399
Instability index46.66
Isoelectric point6.41
Molecular weight88669.25
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01122
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     193.20|      50|      50|     216|     265|       1
---------------------------------------------------------------------------
  154-  212 (45.05/28.71)	CNvglYGNNDITAKIShyvSNlctvYVVSKGVYiLSKEK...LPSASDTERNEIL...RDtGSER
  216-  265 (82.00/58.72)	CS...SGSGTISDAMS...SN....ALKSKSLG.LSNKRLQHLPTIVRGVSGRVE...TD.SDET
  269-  318 (66.15/45.85)	CS...DAPEEVSKIET...SY....TFDDRKDG...NSHISSNPE.YENVTDQGEdyfTD.DQET
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     115.07|      37|     138|     489|     527|       2
---------------------------------------------------------------------------
  489-  527 (60.19/38.85)	LVL.LLGACPErGALVYEY...MENGSlEDRIFQVNNSQPLPW
  627-  667 (54.88/28.10)	IILqLLTAQPA.IALTYTVeiaMENND.DDELIQILDKKAGDW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01122 with Med32 domain of Kingdom Viridiplantae
Unable to open file!