<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01117

Description BnaA09g14010D protein
SequenceMVVVTRDDRLAGARPHVQPMSMSAASKMCGSHLPEAQKSRVHLPQTNWLKHANAFECIPSSNNFLSSSMLYSLESQKPSTSRETASRPIYNIIPVDVQTLAHQHISKAWCALANLSINNTYLRPGITPAIDDINTNCSFSTRGRSTAKVTSNTDGSFFAHNHQEDSQKRIRGTATSFDRFSSSSPGDGKLISGKVPRVYNEVRDSVTGCINGMEVPPIRNFAHPARQVEVIEIDDDDILKSIDVEQIVMEHYHSSCTHQPSFNIFASRGEENPSLPPELCSNCSHGVKLGLCLQAPSHVEQMKDALLAVSNELLDDSTDLSPGHFEQLCQERLLLKKQIQLLEILIQDKEKKNSECLASRPSHNIQYETPQTTNHKADYAQADSRAHIKEQGRYVSDNWNMPRDYLCSEDSSRDFPWTKNLEVNNKRVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICAGITLVISPLVSLIQDQIMNLLQANIHAASLSAGMDWTQQLDILRELSSENSKYRLLYVTPEKVAKSDSLLRHLESLNSHSLLARFVIDEAHCVSQWGHDFRPDYQGLGILKKKFPKIPMLALTATATASVKEDVVQALGLVNTVVFRQSFNRPNLWYSVVPKTNKCLEDIDQFIKKNHFDECGIIYCLSKMDCEKVTETLRKLGHKAAFYHGSMDPGKRAFVQKKWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYYQECGRAGRDGQRSSCVLYYCYSDYIRVKHMISQGGPGQSTMTTGYNRIASSGRTLESNTDNLLRMVSYCENEVDCRRFLQLVHLGENFDSTNCKNTCDNCSSSKTLIEKDVTLIGRQLVEIVKLTGERFSSAHIVELYRGSLNQTVKKHRHETLHLHGAGKHLSKSEASRILHYLVTKDILTEYVKKSDLYGSVSSLLKVNRSKAASILSGGQTIEMRFPSAVKAVKPSKQGPTPARVALKQTTLPMAPAPPQDSILSDTLVKALKKLRADIVKESSDAVMSYHIFGNPTLQQISKRLPRTKEELLDIHGLGKAKVSKYGDRLLETIESTINNHYGTNKNEGTGSGKRRRDENTNPIVVDNDDDDPDWTPSQQSYKKAYAVRGQTSEEAIC
Length1129
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.458
Instability index47.72
Isoelectric point8.54
Molecular weight126131.78
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
chromosome	GO:0005694	IBA:GO_Central
cytoplasm	GO:0005737	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IBA:GO_Central
ATP binding	GO:0005524	IEA:UniProtKB-KW
four-way junction helicase activity	GO:0009378	IBA:GO_Central
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA duplex unwinding	GO:0032508	IBA:GO_Central
DNA recombination	GO:0006310	IBA:GO_Central
DNA repair	GO:0006281	IBA:GO_Central
DNA unwinding involved in DNA replication	GO:0006268	IBA:GO_Central
double-strand break repair via homologous recombination	GO:0000724	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01117
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.51|      21|      23|    1031|    1051|       1
---------------------------------------------------------------------------
 1031- 1051 (36.04/23.43)	QISKRLPRTKEELLDIH.GLGK
 1056- 1077 (31.47/19.51)	KYGDRLLETIESTINNHyGTNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.55|      14|      24|     515|     529|       2
---------------------------------------------------------------------------
  515-  529 (19.87/17.91)	ILRELSSENSkYRLL
  542-  555 (24.68/16.71)	LLRHLESLNS.HSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.42|      23|     152|     729|     757|       6
---------------------------------------------------------------------------
  725-  749 (36.47/40.17)	VIHHSLPKSIEgyYQECGRAGRDGQ
  754-  776 (42.95/24.90)	VLYYCYSDYIR..VKHMISQGGPGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.09|       9|      23|     659|     668|       7
---------------------------------------------------------------------------
  659-  668 (15.40/12.25)	YCLSkMDCEK
  683-  691 (19.69/10.71)	YHGS.MDPGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.16|      10|      22|     466|     475|       8
---------------------------------------------------------------------------
  466-  475 (18.03/10.78)	QLPALICAGI
  489-  498 (17.13/ 9.91)	QIMNLLQANI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.82|      11|      24|     374|     384|      13
---------------------------------------------------------------------------
  374-  384 (20.36/13.27)	NHKADY.AQADS
  400-  411 (18.46/11.32)	NMPRDYlCSEDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.70|      44|     863|      30|      77|      14
---------------------------------------------------------------------------
   30-   77 (71.32/54.59)	GSHLPEAQKSRVhlpqTNWLKHANAF.ECIPSSNNFLSSSMLYSLESQK
  898-  942 (66.38/40.84)	GKHLSKSEASRI....LHYLVTKDILtEYVKKSDLYGSVSSLLKVNRSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.40|      12|     270|      81|      92|      15
---------------------------------------------------------------------------
   81-   92 (22.69/13.67)	SRETASRPIYNI
  354-  365 (23.71/14.62)	SECLASRPSHNI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01117 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) IESTINNHYGTNKNEGTGSGKRRRDENTNPIVVDNDDDDPDWTPSQQSYKKAYAV
1065
1119










Molecular Recognition Features






MoRF SequenceStartStop




NANANA