<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01116

Description BnaC07g13180D protein
SequenceMDQSQQRTVTAPSSSRSYQFHPARAKIIDLFNLYLGRGSRQKPDESARDPPPNKSQKRVHAPSRDFPPGNEQFIVDFQQLQTQFNDPDQLRAITESVSVTMVLQCSNHAPRAEFLLFALRALFRIGFVNWDTFLPSLLASVSAAESSLNQAASSSATSSQSLAPVVIGSPVNEQASLTPLAKDTAMRSSQRVRAAAINSLRQISCKIILIGVEFNLKPVTHAEIFQHMMSWLVSWDMREMGAEKSLSEWLRSCLEVIWLLVDEGQSRIPFYELLRSGLQFIENIPDGDEALFTLVMEIHRRRDTMAMHMLMLDQHLHCPTFGTHRISSQTPANVSAEAVAHLRYSPITYPSVLGEPLCGEDLAMSIPQGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPGYRPSAQAGPIPGAVFTSDMIYANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGADNHILRTNHVTWLLAQIIRVELVMTALNSDLKKVETTRKILSFHREDRTDPNNPQSVLLDFVSSCQNLRIWSLSATTRAYLNNDQLLKGKQIDEWWRSKEERMMDYMNLDDRSIGMFWVVSYTMAQPACETVINWLSSSGMAELPGLQPNERVMMMQEVTPLPMSLLSGFSMNLCLKLALQLEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFTQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKAKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADADHLVYLQTMLEQILATSQHTWSEKTLRHFPSLLRDALNGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPSYVMTYLSHSFPQHRQYLCAGACMLMQGHPDNVNSANLARVLREVSPEEVTANIYTLVDVLLHKVHVDLQRGHNIKEILDKHDANLGFFFWTHEMLPLDIFILALIDRDDDPHALIIAKIILERPELMQRINMYCANRGPPEHWLFTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVVYRLIENNAMDTADKILTAYSHFLAYHPLRFTFVRDILAYFYGHLPGQLVVKILRVLGLSKIPFSESFPQYISNPSSPTCPPLDYFATLLLNLVNNVIPPLSSSSSSNCSSRSGSMADMLNSSSARSLHGKTPGASQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCMNTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHTQLYMEASRVIRETWWLTDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTHLIIKNLRPVTSVAMLRVVFRIMGPLLPRIANTHALFNKTLALLLSTMVDVFGKNSQTQVPVEASQIADLIDFLHHVVHYEGQGGAVQSSSKPRPDILALIGRAADSLRPDVQHLLSHLRTDPNSSIYAAAHQNTAKTNNTS
Length1540
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.060
Instability index45.94
Isoelectric point7.17
Molecular weight172417.29
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01116
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     221.95|      69|     714|     752|     820|       1
---------------------------------------------------------------------------
  752-  820 (115.24/66.66)	ILSLRDFF..SVKREGKGPTEFTETLNRITIMTLAITIKTRGIADADHLV.YLQTMLEQILATSQHTWSEKT
 1465- 1536 (106.71/61.21)	IADLIDFLhhVVHYEGQGGAVQSSSKPRPDILALIGRAADSLRPDVQHLLsHLRTDPNSSIYAAAHQNTAKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.97|      22|     164|     258|     294|       2
---------------------------------------------------------------------------
  235-  256 (41.28/12.91)	WDMREMGAEK.SLSEWLRSCLEV
  258-  280 (35.69/34.40)	WLLVDEGQSRiPFYELLRSGLQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.21|      36|     714|     283|     321|       3
---------------------------------------------------------------------------
  283-  321 (61.77/55.74)	NIPDGDEALFTLVMEIHRRRDTMAMHMLMLDqhlHCPTF
 1004- 1039 (68.44/51.86)	NRGPPEHWLFTQVFKRNELQKALGNHLSWKD...RYPTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.54|      42|     549|     541|     601|       4
---------------------------------------------------------------------------
  542-  595 (62.68/86.88)	YLNNDQLLKgkqiDEWWRSKEERMMDYMnldDRSIGM.....FWVvsytmAQPACETVI
 1330- 1376 (68.86/39.46)	YMEASRVIR....ETWWLTDGKRSQGEL...DSAVGYalmdpTWA.....AQDNTSTAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.14|      14|      14|      39|      52|      17
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   39-   52 (27.03/13.70)	SRQKPDESARDPPP
   55-   68 (27.11/13.76)	SQKRVHAPSRDFPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.10|       9|      18|     367|     377|      19
---------------------------------------------------------------------------
  367-  377 (13.60/15.07)	PqgSLDWERAV
  388-  396 (21.50/14.07)	P..SPDWWKRV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01116 with Med23 domain of Kingdom Viridiplantae
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