<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01116

Description BnaC07g13180D protein
SequenceMDQSQQRTVTAPSSSRSYQFHPARAKIIDLFNLYLGRGSRQKPDESARDPPPNKSQKRVHAPSRDFPPGNEQFIVDFQQLQTQFNDPDQLRAITESVSVTMVLQCSNHAPRAEFLLFALRALFRIGFVNWDTFLPSLLASVSAAESSLNQAASSSATSSQSLAPVVIGSPVNEQASLTPLAKDTAMRSSQRVRAAAINSLRQISCKIILIGVEFNLKPVTHAEIFQHMMSWLVSWDMREMGAEKSLSEWLRSCLEVIWLLVDEGQSRIPFYELLRSGLQFIENIPDGDEALFTLVMEIHRRRDTMAMHMLMLDQHLHCPTFGTHRISSQTPANVSAEAVAHLRYSPITYPSVLGEPLCGEDLAMSIPQGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPGYRPSAQAGPIPGAVFTSDMIYANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGADNHILRTNHVTWLLAQIIRVELVMTALNSDLKKVETTRKILSFHREDRTDPNNPQSVLLDFVSSCQNLRIWSLSATTRAYLNNDQLLKGKQIDEWWRSKEERMMDYMNLDDRSIGMFWVVSYTMAQPACETVINWLSSSGMAELPGLQPNERVMMMQEVTPLPMSLLSGFSMNLCLKLALQLEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFTQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKAKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADADHLVYLQTMLEQILATSQHTWSEKTLRHFPSLLRDALNGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPSYVMTYLSHSFPQHRQYLCAGACMLMQGHPDNVNSANLARVLREVSPEEVTANIYTLVDVLLHKVHVDLQRGHNIKEILDKHDANLGFFFWTHEMLPLDIFILALIDRDDDPHALIIAKIILERPELMQRINMYCANRGPPEHWLFTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVVYRLIENNAMDTADKILTAYSHFLAYHPLRFTFVRDILAYFYGHLPGQLVVKILRVLGLSKIPFSESFPQYISNPSSPTCPPLDYFATLLLNLVNNVIPPLSSSSSSNCSSRSGSMADMLNSSSARSLHGKTPGASQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSTCMNTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHTQLYMEASRVIRETWWLTDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTHLIIKNLRPVTSVAMLRVVFRIMGPLLPRIANTHALFNKTLALLLSTMVDVFGKNSQTQVPVEASQIADLIDFLHHVVHYEGQGGAVQSSSKPRPDILALIGRAADSLRPDVQHLLSHLRTDPNSSIYAAAHQNTAKTNNTS
Length1540
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.060
Instability index45.94
Isoelectric point7.17
Molecular weight172417.29
Publications
PubMed=25146293

Function

Annotated function 
ECO:0000256	RuleBase:RU364145
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central
GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01116
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     221.95|      69|     714|     752|     820|       1
---------------------------------------------------------------------------
  752-  820 (115.24/66.66)	ILSLRDFF..SVKREGKGPTEFTETLNRITIMTLAITIKTRGIADADHLV.YLQTMLEQILATSQHTWSEKT
 1465- 1536 (106.71/61.21)	IADLIDFLhhVVHYEGQGGAVQSSSKPRPDILALIGRAADSLRPDVQHLLsHLRTDPNSSIYAAAHQNTAKT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.97|      22|     164|     258|     294|       2
---------------------------------------------------------------------------
  235-  256 (41.28/12.91)	WDMREMGAEK.SLSEWLRSCLEV
  258-  280 (35.69/34.40)	WLLVDEGQSRiPFYELLRSGLQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     130.21|      36|     714|     283|     321|       3
---------------------------------------------------------------------------
  283-  321 (61.77/55.74)	NIPDGDEALFTLVMEIHRRRDTMAMHMLMLDqhlHCPTF
 1004- 1039 (68.44/51.86)	NRGPPEHWLFTQVFKRNELQKALGNHLSWKD...RYPTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.54|      42|     549|     541|     601|       4
---------------------------------------------------------------------------
  542-  595 (62.68/86.88)	YLNNDQLLKgkqiDEWWRSKEERMMDYMnldDRSIGM.....FWVvsytmAQPACETVI
 1330- 1376 (68.86/39.46)	YMEASRVIR....ETWWLTDGKRSQGEL...DSAVGYalmdpTWA.....AQDNTSTAI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.14|      14|      14|      39|      52|      17
---------------------------------------------------------------------------
   39-   52 (27.03/13.70)	SRQKPDESARDPPP
   55-   68 (27.11/13.76)	SQKRVHAPSRDFPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.10|       9|      18|     367|     377|      19
---------------------------------------------------------------------------
  367-  377 (13.60/15.07)	PqgSLDWERAV
  388-  396 (21.50/14.07)	P..SPDWWKRV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01116 with Med23 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




1) RSYQFHPARAKIIDLFNLYLGRGSR
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