<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01114

Description BnaC07g15690D protein
SequenceMSGGGPKAQEGELFVAVAVKSIIGDKLGGGGSRRAVRWAIDNLLPKAYRFVMIHVIPTITTIPTPSKIMFQLMFMRMLVVAAGERLPLKEVEERLVEMYVREVKQEFESVFVPFLKMCKSNSTKVETRLLEYDDPAKALLRFIFESGVNSLVMGSFTPNIFTRITKGPGVPLTVLRYAPETCEVYIVCKDKITTKSMDPLVNAGPSTRPQAGASARGYLKDGAASFHTVQSQPLSDHRETIEPGTRRSVSAKELRSTDYSQLKTPSDSSARVSEIVRRRGASDIPKLNYSCFDQTNQPKSNLENIVEEPPATSKKAKKVDIEAEVKRLKKELENTVLKYKQTYEELTSTKNKVHVLALECSEDARRVNSAVEKEEFQKKIAALEKERYMKAAKEVEAAKALLAKEFCQRQIAQVNSLRTYLEKKKVIDQLLGTDDQRYRKYTIEEIIAATEGFSPEKVIGEGGYGTVYHCSLDSTPVAVKVVRLDRPEKKQEFLKEVEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEEYIFHQKYKPPLPWFIRFRVIFEVACGLAFLHSSKPDPIVHRDLKPGNILLNRNYVSKIADVGLAKLVTDVAPDNVTMYRHSVLAGTLHYIDPEYHRTGTIRLKSDLYAFGIIILQLLTARRPNGLVHAVENAVKKGTLTEMLDKSVTEWPLAETEELARIGLKCAEFRCRDRPDLKEEVIPVLKRLVETANSKIKKEQCNVRAPSHYFCPILRELMEEPEIAADGFTYEKKAILAWFEKHNVSPVTRQKLDHFKLTPNNTLRSAIRDWKSRVRFSNAFVDTSC
Length816
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.333
Instability index41.95
Isoelectric point9.06
Molecular weight92285.60
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01114
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.91|      44|      48|     328|     375|       1
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  299-  328 (45.56/27.90)	KSN...LENIV.......EEPPAT............SKKAKKVDI...EAEVKRL
  329-  376 (62.27/53.86)	KKE...LENTVlKYKQTYEELTSTKNkvhVLALE.CSEDARRVNS...AVEKEEF
  377-  425 (46.08/28.30)	QKKiaaLEKE..RYMKAAKEVEAAKA...LLAKEfCQRQIAQVNSlrtYLEKKK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.42|      27|      33|      90|     120|       2
---------------------------------------------------------------------------
   90-  117 (40.89/40.40)	EVEERLVEmYVREVKQEFESVF...VPFLKM
  124-  153 (39.53/23.36)	KVETRLLE.YDDPAKALLRFIFesgVNSLVM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     200.50|      64|     305|     168|     234|       3
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  168-  234 (102.41/84.69)	PgVPLTVLRYA.PETCEVYIvcKD.KITTKSMDPLVNAGPSTRPQAGASARGYLKDGAAS...FHTVQSQPL
  476-  544 (98.09/68.71)	P.VAVKVVRLDrPEKKQEFL..KEvEVLSQLRHPHVVLLLGACPENGCLVYEYLENGSLEeyiFHQKYKPPL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.17|      23|      48|     598|     620|       4
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  598-  620 (39.17/27.07)	KLVTDVAPDN.VTMYRHSVLAGTL
  648-  671 (34.00/22.52)	QLLTARRPNGlVHAVENAVKKGTL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.03|      25|      29|     235|     260|       5
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  235-  260 (38.03/29.29)	SDHRETIEPGTRRSvSAKELRSTDYS
  266-  290 (40.99/26.84)	SDSSARVSEIVRRR.GASDIPKLNYS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.26|      30|     401|      40|      69|       6
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   40-   69 (54.14/30.91)	IDNLL...PKAYRFVMIHVIPTITTIPTPSKIM
  427-  459 (46.12/25.42)	IDQLLgtdDQRYRKYTIEEIIAATEGFSPEKVI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01114 with Med32 domain of Kingdom Viridiplantae
Unable to open file!