<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01113

Description BnaC03g13140D protein
SequenceMVVMSNKFFESIGGAPTYSMVAVAVKGSVGDAVGGAASRRALRWTVENLLPNVDRLVLVHVMPTVTTIPSPSGSKIPVEELEESVVSMYKRDLRKEYEQVFVPFKKLCGSSKIETLLMEHDDPAKALLKYVSDSEVECLVLGSCSSSFLTRKKGQEMPLRVLREAPETCEIYVICKDRILTKSTNQLSPDSSSSFRIPQGAEAYTETFSRTRSDRTGLSASSMSSSGRKHSRRPASLPHSNPVSRVFSDAQSSTDIGLVDDEHTRSVIRHSIVSGNKMQLNPGANIKTPKSDVKSEVAQLRKEVETTLSMYKQACEELVHKQTQVKSLSSECIKETRRVITALEKEEMLRKAAAEEKEKHLKAVKEVQEAKSMLAKEFCDRQLAELSALKQSIEKQKVIDQLFLKDGRYRKYTKEEIAAATDNFSSRKIIGEGGYGKVYKCSLDHTPVALKVLKPDSIEKKEEFLREISVLSQLRHPHVVLLLGACPDNGCLVYEYMENGSLDAHISPKKGKPSLSWFIRFRIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDRNFVSKIGDVGLAKLMSEESPDSVTVYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTARHPNGLLFCVEDAVKRGCFGDMLDGSVRDWPMAEVEELARIAIKCSQLKCRDRPDLDTQVLPALKRILESANERLKREQDNVRPPSHYYCPILKEIMEDPYIAADGFTYEGRAIRAWIQHNQNVSPVTKHRLKHCDLTPNHTLKSAIQEWRSRSRLDLSTTLGSF
Length788
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.389
Instability index51.86
Isoelectric point8.80
Molecular weight88487.67
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01113
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.57|      29|      30|     166|     194|       1
---------------------------------------------------------------------------
  138-  158 (23.26/13.20)	...CLVLGSCSSSFLTRKKGQEMP......
  166-  194 (51.55/39.79)	PETCEIYVICKDRILTKSTNQLSPDS.SSS
  198-  226 (40.76/29.65)	PQGAEAYTETFSRTRSDRTG.LSASSmSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.52|      21|     114|     344|     364|       2
---------------------------------------------------------------------------
  316-  339 (17.15/ 6.93)	..EELVHKQTqvkslSSECIKETRRV
  344-  364 (32.76/19.29)	EKEEMLRKAA.....AEEKEKHLKAV
  369-  389 (28.62/16.01)	EAKSMLAKEF.....CDRQLAELSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.63|      22|     147|     468|     501|       3
---------------------------------------------------------------------------
  475-  501 (36.67/39.41)	RHPHVVLLlgaCPDN....GClvYEYMENGS
  624-  649 (39.96/16.62)	RHPNGLLF...CVEDavkrGC..FGDMLDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.01|      52|     314|     233|     292|       4
---------------------------------------------------------------------------
  233-  292 (83.60/73.57)	RPAS.LPHSNPVSRVfsdaqssTDIG...LVDDEHTRS..VIRHSIVSGNKMQLNP....GANIKtPKSD
  548-  609 (75.41/48.57)	KPGNiLLDRNFVSKI.......GDVGlakLMSEESPDSvtVYRNSIIAGTLYYMDPeyqrTGTIR.PKSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.49|      17|     204|      92|     108|       7
---------------------------------------------------------------------------
   92-  108 (31.32/19.82)	DLRKEYEQVFVPFKKLC
  299-  315 (30.17/18.85)	QLRKEVETTLSMYKQAC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01113 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AYTETFSRTRSDRTGLSASSMSSSGRKHSRRPASLPHSNPVSRVFSDAQS
2) VIRHSIVSGNKMQLNPGANIKTPKSDVKSEVAQ
203
267
252
299










Molecular Recognition Features






MoRF SequenceStartStop




NANANA