<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01113

Description BnaC03g13140D protein
SequenceMVVMSNKFFESIGGAPTYSMVAVAVKGSVGDAVGGAASRRALRWTVENLLPNVDRLVLVHVMPTVTTIPSPSGSKIPVEELEESVVSMYKRDLRKEYEQVFVPFKKLCGSSKIETLLMEHDDPAKALLKYVSDSEVECLVLGSCSSSFLTRKKGQEMPLRVLREAPETCEIYVICKDRILTKSTNQLSPDSSSSFRIPQGAEAYTETFSRTRSDRTGLSASSMSSSGRKHSRRPASLPHSNPVSRVFSDAQSSTDIGLVDDEHTRSVIRHSIVSGNKMQLNPGANIKTPKSDVKSEVAQLRKEVETTLSMYKQACEELVHKQTQVKSLSSECIKETRRVITALEKEEMLRKAAAEEKEKHLKAVKEVQEAKSMLAKEFCDRQLAELSALKQSIEKQKVIDQLFLKDGRYRKYTKEEIAAATDNFSSRKIIGEGGYGKVYKCSLDHTPVALKVLKPDSIEKKEEFLREISVLSQLRHPHVVLLLGACPDNGCLVYEYMENGSLDAHISPKKGKPSLSWFIRFRIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDRNFVSKIGDVGLAKLMSEESPDSVTVYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTARHPNGLLFCVEDAVKRGCFGDMLDGSVRDWPMAEVEELARIAIKCSQLKCRDRPDLDTQVLPALKRILESANERLKREQDNVRPPSHYYCPILKEIMEDPYIAADGFTYEGRAIRAWIQHNQNVSPVTKHRLKHCDLTPNHTLKSAIQEWRSRSRLDLSTTLGSF
Length788
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.389
Instability index51.86
Isoelectric point8.80
Molecular weight88487.67
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01113
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.57|      29|      30|     166|     194|       1
---------------------------------------------------------------------------
  138-  158 (23.26/13.20)	...CLVLGSCSSSFLTRKKGQEMP......
  166-  194 (51.55/39.79)	PETCEIYVICKDRILTKSTNQLSPDS.SSS
  198-  226 (40.76/29.65)	PQGAEAYTETFSRTRSDRTG.LSASSmSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.52|      21|     114|     344|     364|       2
---------------------------------------------------------------------------
  316-  339 (17.15/ 6.93)	..EELVHKQTqvkslSSECIKETRRV
  344-  364 (32.76/19.29)	EKEEMLRKAA.....AEEKEKHLKAV
  369-  389 (28.62/16.01)	EAKSMLAKEF.....CDRQLAELSAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.63|      22|     147|     468|     501|       3
---------------------------------------------------------------------------
  475-  501 (36.67/39.41)	RHPHVVLLlgaCPDN....GClvYEYMENGS
  624-  649 (39.96/16.62)	RHPNGLLF...CVEDavkrGC..FGDMLDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     159.01|      52|     314|     233|     292|       4
---------------------------------------------------------------------------
  233-  292 (83.60/73.57)	RPAS.LPHSNPVSRVfsdaqssTDIG...LVDDEHTRS..VIRHSIVSGNKMQLNP....GANIKtPKSD
  548-  609 (75.41/48.57)	KPGNiLLDRNFVSKI.......GDVGlakLMSEESPDSvtVYRNSIIAGTLYYMDPeyqrTGTIR.PKSD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.49|      17|     204|      92|     108|       7
---------------------------------------------------------------------------
   92-  108 (31.32/19.82)	DLRKEYEQVFVPFKKLC
  299-  315 (30.17/18.85)	QLRKEVETTLSMYKQAC
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01113 with Med32 domain of Kingdom Viridiplantae
Unable to open file!