<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01112

Description BnaC04g12140D protein
SequenceMDAGEARMTPGACLWMHRKLKMFLVSIAAALILHHVGLHVNLSFEVEKLRAELRHVQEMYTAAQTETFDASRKLAELNQRRLEEAIKLEELKLKEYEARELAEKEKQNFEKARRDAESMRERAEREIAQRREAERKAARDAKEKEKLEDTLGSPRLQYQHFTWEEIVAATSSFSEELKIGMGAYGSVYKCNMHHTTAAVKVLHTAESGLSKQFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGSLEDRLFQANNSPPLPWFERVRIAWEVAAALIFLHKSKPKPIIHCDLKPANILLDHNFVSKVEDVGLSTMVQVDPLSTKFTIYKQTSPVGTLSYMDPEYQRTGMISSKSDVYSFGMIVLQLLTAKPPMALTHLVESAMDSNDEFLKILDQKAGNWPVEETRELTSLALCCTELRGKDRLDLRDQILPALESLKKVAEKARNSISSVPTQPPFHFLCPLLKDVMNEPCVAADGYTYDRRAIEEWFEEHNTSPMTDSPLLSKNLLPNYTLYTAIMEWRSRLK
Length529
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.400
Instability index44.77
Isoelectric point6.15
Molecular weight60474.83
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01112
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.99|      42|      49|     349|     395|       1
---------------------------------------------------------------------------
  349-  395 (59.92/49.86)	QRTG..MISSKSDVYSFGMIVLQlLTAKPPMALTHLVESAMDSndefLK
  399-  442 (64.08/39.00)	QKAGnwPVEETRELTSLALCCTE.LRGKDRLDLRDQILPALES....LK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.45|      23|      23|      94|     116|       2
---------------------------------------------------------------------------
   68-   89 (20.88/10.07)	..FDAsRKLAELNQRRLEEAIKLE
   94-  116 (38.38/24.46)	KEYEA.RELAEKEKQNFEKARRDA
  120-  133 (21.19/10.32)	RERAE.REIAQ.........RREA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.36|      27|     168|      28|      55|       3
---------------------------------------------------------------------------
   28-   55 (41.10/30.04)	AAALILH..HVGLHVNLSFEVEKLrAELRH
  197-  225 (40.26/24.60)	AAVKVLHtaESGLSKQFQQELEIL.SKIRH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01112 with Med32 domain of Kingdom Viridiplantae
Unable to open file!