<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01109

Description BnaC06g01010D protein
SequenceMYIEVNRYLVQVLKKLYLVFTVRAVDYKEISVNGKSNMTPAGDKANVEEPMMYATKQEAKAAFKSLLESVNVQSDWTWEQTTKVIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRPRDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCDYIKASTQWRKIQDRLEDDERCSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEEITEELEKQYHEDKSRVKDAMKSRKVSMVSSWVFEDFKSALSEDLSSQPISDINLKLIYNELVERMKEKEEKEARKLQRLAEEFTNLLRTFKEINAASNWEDVKQLVEESQEYRSIGDGNVSRGLFEEYITSLQEKAKEKERKRDEEKSRKEKDKEEKEKRKERREKEREREKERSSKREESEGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKWSSSRKHDRKKSRKHANTPESDSENRHKRQKKEQRESSRRGGGNDELEDGEVGEDGEIRL
Length610
PositionUnknown
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-1.356
Instability index52.45
Isoelectric point6.30
Molecular weight72886.44
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01109
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     475.21|      65|      65|     122|     186|       1
---------------------------------------------------------------------------
   61-  127 (68.66/24.14)	AAFKSLLES...V.NVQSDWTWEQTTKVIVHDKRYGAL......RTLGERKQAF.NEYLGQ..RKkvEAE.E......rrwRQKKAR
  128-  196 (91.24/34.11)	EEFVKMLEE...CEELSSSMKWSKALSLFENDERFKAV......DRPRDREDLF.DNYIVELERK..ERE.K....avaehRQKMA.
  197-  269 (74.46/26.70)	.EYRKFLET...CDYIKASTQWRKIQDRLEDDERCSCL......EKI.DRLIGF.EDYINDLEKE..EEElKrvekehvrrAERKNR
  270-  337 (65.78/22.87)	DAFRTLLEEhvaAGILTAKTYWLEYCIEVRDLPQYQAVasnlsgSTPK...DLF.EEITEELEKQ..YHE.............DKSR
  403-  471 (75.72/27.26)	EEFTNLLRT...FKEINAASNWEDVKQLVEESQEYRSI......GDGNVSRGLF.EEYITSLQEK..AKE.K.....erkrDEEKSR
  472-  532 (49.37/15.61)	KE..KDKEE...KEK....RKERR......EKEREREK......ERSSKREESEgDVDVSEGQKE..EKR.K..gkdrdrkHRRRHH
  533-  584 (49.98/15.89)	NSDDDVSSD...RDDREESKKWSSS....RKHDRKKSR......KHANTPESDS.EN.....................rhkRQKKEQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01109 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KAKEKERKRDEEKSRKEKDKEEKEKRKERREKEREREKERSSKREESEGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKWSSSRKHDRKKSRKHANTPESDSENRHKRQKKEQRESSRRGGGNDELEDGEVGEDGEIRL
457
610










Molecular Recognition Features






MoRF SequenceStartStop




1) EESKKWSSSRKHDRKKSRKHANTPESDSENRHKRQKKEQRESS
2) GDVDVSEGQKEEKRKGKDRDRKHRRRHHNSD
3) GNDELEDGEVGEDGEIRL
4) LFEEYITSLQE
546
505
593
446
588
535
610
456