<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01108

Description BnaA03g47180D protein
SequenceMSRSMEYLALPPPLHSPPSFHTVFVALSGSRKSKYVVTWALEKFGPEGNVGFKLLHIHPRITCVPTPMGNTIPISEVREDVVIAYRQEILCQSELVLTPFKKMFEKRKVAVEVVVIESNNVAAAIAEEVIRNSTERLVIGSSSRRFFSRRVDLCSAISALMPNFCTVYVVSKGKLSSVRPGYLDANASIRDDTSSSSSRPISESTDGTSSARDSSSSSIPLPVRRLQHLTTAARQASAQMETNSVGSEVTMCMSMDVSRTNKSSMDTKSPSTPGLRDNEERKKPMSSSSSNLEYGNATHSRSSQQASSMCDNISEQSYTSNQVNLSFEVDKLKAELRHIQEMYTVAQTEIFDASRTLGELNQRRLEEARKLEEIKLKEYEAQELAEKEKQNFEKAKRDVESMREKVEKEIAQRREAERKATRDAQEKEKLEGTLGTPQLQYQHFTWEEIVAATSSFSDEMKIGMGACGAVYKCNMHHTTAAVKVLHSPESRLSKEFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGNLEDRLFQVNNTPPLPWFERVRIAWEVASALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDHLSTKYTIYKQTSPVGTISYMDPEYQRTGMISSKSDVYSFGIILLQLLTAKPPMALTHFVESAMDTNDGFLKILDRKAGNWPVEETRELTALALCCTELRAKDRPDLRDQVLPALESMKRVAEKARHSISEVPTQPPTHFLCPLLKDVMNEPCVAADGYTYDRHAIEKWFEGHNTSPMTDSPLNNKDLLPNYTLYTAIMEWRCRLK
Length812
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.445
Instability index49.87
Isoelectric point6.91
Molecular weight91444.21
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01108
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     313.41|      91|     136|     490|     582|       1
---------------------------------------------------------------------------
  490-  566 (110.69/80.94)	.........................................................SRLSKEFQQELEILSK..I.RHPHLVL..LLGACPEQgALVYEYMENG.NLEDRLFQVNNTPPLPW.FERVRIAWEVASALVFL
  568-  705 (108.40/76.35)	KSKPKPIIHRDLKPAnilldhnfvskvgdvglstmvqvdhlstkytiykqtspvgtiSYMDPEYQRTGMISSKsdV.YSFGIILlqLLTAKPPM.ALTH.FVESAmDTNDGFLKILDRKAGNWpVEETRELTALALCCTEL
  706-  777 (94.32/60.39)	RAKDRPDLRDQVLPA........................................leS.MKRVAEKARHSISE..VpTQPPTHF..L...CP....LLKDVMNEP.CVAADGYTYDRHAIEKW.FE...............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.45|      19|      23|     176|     196|       2
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  176-  196 (28.25/18.95)	SsvRP..GYLDANASIRDDTSSS
  198-  218 (27.48/12.76)	S..RPisESTDGTSSARDSSSSS
  272-  289 (28.72/13.64)	T...P..GLRDNEERKKPMSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.18|      21|      23|     383|     405|       3
---------------------------------------------------------------------------
  383-  405 (25.22/25.33)	ELAEKeKQNFEKAKRDVESmREK
  409-  429 (33.97/21.99)	EIAQR.REAERKATRDAQE.KEK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.03|      18|      23|     318|     340|       4
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  318-  336 (25.16/25.87)	YTSNQVNLsFEVDKLKAEL
  343-  360 (29.87/13.58)	YTVAQTEI.FDASRTLGEL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.48|      11|      23|     234|     244|       5
---------------------------------------------------------------------------
  234-  244 (18.71/12.21)	RQASAQMETNS
  259-  269 (18.77/12.28)	RTNKSSMDTKS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01108 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEKEKQNFEKAKRDVESMREKVEKEIAQRREAERKATRDAQEKEKLEGTL
2) NASIRDDTSSSSSRPISESTDGTSSARDSSSSSIPLPVRRLQHLTTAARQASAQMETNSVGSEVTMCMSMDVSRTNKSSMDTKSPSTPGLRDNEERKKPMSSSSSNLEYGNATHSRSSQQASSMCDNISE
385
186
434
315










Molecular Recognition Features






MoRF SequenceStartStop




NANANA