<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01106

Description BnaCnng03200D protein
SequenceMTSSLSSNPVIAEERPTETSTDLTVNSLSTEAPEKKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVEKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMSLHVSMSFPTQINNVPGYTSWDDDTSALLNIAVSEVILPKDELTTLCGGEGKHSHLHSFFFFAWPSSCSTCSSRTVSDSKTANQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLTVNLSNPDFEPALLAGVVRDLWSRTKQVIYLLGELLAHNNCLSAIKCCLRLLSEENITDQEGNMAVLVRTSSHQIGQSPARLGLTGPGSPSVQNLTPSRHGHPTSSSSSQSHHQQQQIQQPPPNLPPSSSQMRASQLYAFADLDIGLPKTVENIEKKVEALMEPPPPPPDLSAIQGLLPPNIAVPSGWKPGMPVELPKDWRLPAPPPGWKPGDPVVLPPELVPAPRAQEQQQVRPPQGLHRPPDVIHVREVQLDIMEDDSSEYSSEESSDDEE
Length534
PositionMiddle
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.537
Instability index59.86
Isoelectric point5.82
Molecular weight59049.05
Publications
PubMed=25146293

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
DNA binding	GO:0003677	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01106
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.68|      28|      36|     425|     459|       1
---------------------------------------------------------------------------
  383-  428 (31.99/ 9.71)	PPN.......LPPsssqmrasQLYAFADLDIGLPktVEnIEK........kvealmePPPP
  429-  466 (48.88/27.03)	PPDlsaiqglLPP........NIAVPSGWKPGMP..VE.LPK............dwrLPAP
  467-  499 (31.82/ 9.62)	PP.........................GWKPGDP..VV.LPPelvpapraqeqqqvrPPQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.67|      25|      29|      85|     109|       2
---------------------------------------------------------------------------
   85-  109 (46.57/33.63)	RSHAQKYFLKVEKNGTLA.HVPPPRP
  111-  136 (42.10/29.62)	RKAAHPYPQKASKNAQMSlHVSMSFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.95|      13|      16|     340|     352|       6
---------------------------------------------------------------------------
  340-  352 (24.75/12.03)	PARLGLTGPGSPS
  358-  370 (25.20/12.37)	PSRHGHPTSSSSS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01106 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GQSPARLGLTGPGSPSVQNLTPSRHGHPTSSSSSQSHHQQQQIQQPPPNLPPSSSQMRASQLYA
2) VENIEKKVEALMEPPPPPPDLSAIQGLLPPNIAVPSGWKPGMPVELPKDWRLPAPPPGWKPGDPVVLPPELVPAPRAQEQQQVRPPQGLHRPPDVIHVREVQLDIMEDDSSEYSSEESSDDEE
337
412
400
534










Molecular Recognition Features






MoRF SequenceStartStop




1) PQGLHRPPDVIHVREVQLDIMEDDSSEY
497
524