<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01097

Description BnaA06g16210D protein
SequenceMGSIGGDELGLDVDETIFVAVAEDVERSKTTLLWAARNFSGKKICLLYVHRPARPASWTHKKLAGGTFRKHAVKVIERVDKQKVDELMDSYLRLLSKTEVQTDKLCIAGQNIEEGIVDLIARHNIKWFVMGAASDKHYSWRMTDLKSKKAIFVCKNAPDFCHIWFLCKGYLIFTRTTNDDTSNTQTMPPLVQLDSDTETRRSEKLESSYMRRRLRYWRSLLEQDGEKDTGQLEREKVEPSPTTHSSSGSGSSFGEPVGPEPASPDLVGSDTLTPSNVQERKREGNVAREVHRYDKAMHDISQSERTVYGEARNGWKEDDSTMEALCKAKALDGLCSKELSRRKKLEELLEKEKDEVKTVIEQNNGFMRKLQIVQGDNLRLESQITKLQDLEKEHGEKFDTAMELLKSFRQKRDEIRIDHENAIKEVNALKRLIKGKSVESSGSEMLDYSFMEINEATNEFDPSWKLGEGKYGSVYKGNLQNLQVAVKMLPSYGSQNHFEFERKVEILSRLRHPHLVTIMGTCPESRSVIYQYVPNGSLEDCFSSANNVPALPWESRIRIASEICSALLFLHSNVPCIIHGNLKPSKILLDSNLVTKISDYGISQLIPVNGIDKSDPHVDPHYFVSGEMTLESDVYSFGMILLQLLTRRPLSGVLRDVKCAVENDNISAVLDNSGGDWPIARGKKLANIAIRCCKRNPLNRPDLAVVLRNIDRMKAPLSEQSSYSSNQKPPRKPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDWHNQW
Length803
PositionTail
OrganismBrassica napus (Rape)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.536
Instability index44.94
Isoelectric point6.57
Molecular weight91022.55
Publications
PubMed=25146293

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01097
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.51|      21|      32|     695|     723|       1
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  695-  717 (32.12/26.44)	RNPLNRPD...LAVVLRNIdrMKAPL
  727-  750 (36.39/12.92)	QKPPRKPPshyLCPIFQEV..MKDPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.00|      17|      32|     420|     436|       4
---------------------------------------------------------------------------
  420-  436 (26.26/17.83)	ENAIKEVNALKRLIKGK
  454-  470 (30.74/22.17)	NEATNEFDPSWKLGEGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.52|      19|      32|     541|     563|       5
---------------------------------------------------------------------------
  542-  563 (23.95/29.12)	FSSaNNVPAL......PweSRIRIASEI
  569-  593 (27.57/11.98)	FLH.SNVPCIihgnlkP..SKILLDSNL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.67|      26|      32|     344|     371|       6
---------------------------------------------------------------------------
  344-  369 (41.22/30.77)	KLEELLEKEKDEVKTVIEQNNGFMRK
  386-  411 (42.44/24.88)	KLQDLEKEHGEKFDTAMELLKSFRQK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01097 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KDTGQLEREKVEPSPTTHSSSGSGSSFGEPVGPEPASPDLVGSDTLTPSNVQERKREGNVAREVHRYDKAMHDISQSERTVYGEARNGWK
227
316










Molecular Recognition Features






MoRF SequenceStartStop




NANANA