<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01082

Description C/H/G cyclin
SequenceMAANYWDSTQRTHWTFTKDQLDDMRSQQQQENQELYNKYPLPEPRLMNIYIQQQIVKLGRRMNVRQQPLATAQIYVRRFYTKVEMRRTNPYLVMTTAVYVACKVEECPIHIRLVLAEAARQWPELGINDISKIGECEFHLISTMSARMIVHHPYRTLNDLAPGLSMSTEETALSQNIINDHYNTDMPLMYPPHIIAVTAMFLAVVLRPTQSNLQAHAAATSSPAIKSALDSPNKIARLTDWMAASQIDIPAVMAATQEFLSLYEVWENYGERACKEAISRFMKDAQLGK
Length289
PositionKinase
OrganismAureobasidium pullulans EXF-150
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Dothideales> Saccotheciaceae> Aureobasidium.
Aromaticity0.08
Grand average of hydropathy-0.318
Instability index61.69
Isoelectric point7.09
Molecular weight33196.83
Publications
PubMed=24984952

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01082
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.04|      22|      22|      29|      50|       1
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   29-   50 (40.21/21.62)	QQENQELYNKYPLPEPRL..MNIY
   52-   75 (32.83/16.65)	QQQIVKLGRRMNVRQQPLatAQIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.48|      16|      19|      82|      97|       2
---------------------------------------------------------------------------
   82-   97 (28.18/21.62)	KVEMRRTNPYLVMTTA
  103-  118 (27.30/20.74)	KVEECPIHIRLVLAEA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01082 with CycC domain of Kingdom Fungi
Unable to open file!