<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01047

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSSSAHNGKDQSFPTPPSSYVPTNSLSNRDLNSHKSTPPHANSDMDTDMPDAQAQPPSLPSRPVLPLLCQSPHPISRPHPNENLINLYGLQSIANSVRRTDPITGEKINKLRKSYEGKVKNFGLSGKNKPTDVPGELAGFMQWDEGSWYDQRIHGRELENAQSSSLMANLGRALTMNPGTLPADEHNKWKAILGLDDGNKTPSQPANKIAAHPQMLKAQASSMRASAPASPRSSNPNGIRPDRSNKKRRYDESSYSGYNESYQEDDGYSTGGLDDKRNSAAKKRRKDYPTNFETSGGSPAFNNGMLGVGVKSS
Length313
PositionHead
OrganismAureobasidium namibiae CBS 147.97
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Dothideales> Saccotheciaceae> Aureobasidium.
Aromaticity0.06
Grand average of hydropathy-1.029
Instability index58.57
Isoelectric point9.31
Molecular weight34116.29
Publications
PubMed=24984952

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP01047
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.84|      28|      33|     243|     273|       1
---------------------------------------------------------------------------
  243-  273 (46.81/32.21)	RSN..KKRRYDessYSGYNESYQEDDGYSTGGL
  277-  306 (47.04/25.41)	RNSaaKKRRKD...YPTNFETSGGSPAFNNGML
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.51|      16|      17|      24|      39|       2
---------------------------------------------------------------------------
   15-   36 (23.08/10.75)	TPPssyvptNSLSNRDLNSHKS
   37-   54 (26.43/13.35)	TPP....haNSDMDTDMPDAQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.47|      18|      20|     172|     191|       3
---------------------------------------------------------------------------
  174-  191 (34.35/21.92)	LTMNPGT.LPADEHNKWKA
  193-  211 (27.12/10.10)	LGLDDGNkTPSQPANKIAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.82|      15|      32|      88|     106|       5
---------------------------------------------------------------------------
   88-  106 (14.35/22.19)	YGLqSIANsvRRTDpITGE
  122-  136 (29.47/17.25)	FGL.SGKN..KPTD.VPGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01047 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MSSSAHNGKDQSFPTPPSSYVPTNSLSNRDLNSHKSTPPHANSDMDTDMPDAQAQPPSLPSRPVLPLLCQSPHPISRPHPNENLINLYGLQ
2) QRIHGRELENAQSSSLMANLGRALTMNPGTLPADEHNKWKAILGLDDGNKTPSQPANKIAAHPQMLKAQASSMRASAPASPRSSNPNGIRPDRSNKKRRYDESSYSGYNESYQEDDGYSTGGLDDKRNSAAKKRRKDYPTNFETSGGSPAFNNGMLGVGVKSS
1
151
91
313










Molecular Recognition Features






MoRF SequenceStartStop




1) AAKKRRKDYPTNF
2) WKAILG
280
189
292
194