<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01033
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MDNLDDLFGEEGINAAIAATFDTDALSQRIERSHIVGCCQRLAWSRTSCIAQISADSRKVLVRALCRDKNTAKWSLSDATEVNASDGAIFTHVEWSSSGLDLVIADQFGRLTLFSLTHALNSLERRPVNLTSNVDDLNQIVGLHWLPLNLAGQTRTALINPAAKEGNRWSNTMRLHDIHGVSNPIDNKAAFLCITRRCQLKLIYEQPGQPWSQAGSTLDSLTDSGDALTHAAFCQANQHLVMVTYDASKHLRLYKIMINWQANAGDGNTHKASLNPQMAILHVELLDQCVPQSSERAASAQLSSLHIEPISQAIDNSTFTVVAVFTSAAQDHGGKFSVISRWDLQQTEATLHESFKGLKPTASQPNNSKSIQRLHRMEDVISPKAILAFQSNVYHNTFAFAASDGTIEFRSRETMQVIEPDHDANKATSLPQNGFNFLTSECVDISLSPSMASSVITKPDGTVNLHSAEYIHGWKDVKEDNDLAQAAVVSLARELGIVTCYQIGFDDLLSVIPTDLDRSLRRKFISEIFRTINRNTDFSLDDPKLQSGRVLKDSLLYRIASAQLIVSYQTDPKRRDIPAKAAWVLLNLRSVCTNIAQTLSMTQTIRGMQNLESSLFVSLKGLVRWSLDLMTLIFDDMIEMMRFCKSDFDRQKILTYVHEKNTATLHLLLSSTSRALLGMLGNLIRNFAMRVVKTQEKVRHSSRANDIRDSVELQHMEAMMGAELPFEIRLFEQLVAETDGNVRATYQAAQSSPPQRSFYEQSMLVDADIPEALSPVLQKLFGDIVPRLEKQIDGVAIYTAETAWLGLGEDEEANKRAGRQQYDVLRKCAIPPNAKVRQCRRCGSVIENLVDGHMAAWVQNAHKMCICLSHWIVA |
Length | 874 |
Position | Tail |
Organism | Aureobasidium melanogenum CBS 110374 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes>
Dothideomycetidae> Dothideales> Saccotheciaceae> Aureobasidium.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.201 |
Instability index | 43.49 |
Isoelectric point | 6.24 |
Molecular weight | 97378.66 |
Publications | PubMed=24984952
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP01033
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 93.74| 30| 36| 395| 425| 1
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395- 425 (49.22/36.88) HNTFAFAASDgTIEFRSRETM..QVI.EPDHDAN
432- 464 (44.52/28.00) QNGFNFLTSE.CVDISLSPSMasSVItKPDGTVN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 136.85| 36| 41| 132| 171| 2
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95- 128 (20.34/ 6.20) .........WsssgLD.......LVIADQfGRLTLfsLTHALNSLERRPV
136- 171 (63.62/42.08) DLNQIVGLHW....LP.......LNLAGQ.TRTAL..INPAAKEGNRWSN
174- 213 (52.89/25.91) RLHDIHGVS.....NPidnkaafLCITRR.CQLKL..IY..EQPGQPWSQ
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 37.21| 10| 37| 223| 232| 4
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223- 232 (18.05/ 9.42) DSGDALTHAA
263- 272 (19.16/10.40) NAGDGNTHKA
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 98.61| 30| 42| 675| 704| 7
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675- 704 (50.85/36.49) ALLGM.LGNLIRNFAMRVVKTQEKVRHSSRA
718- 748 (47.77/33.84) AMMGAeLPFEIRLFEQLVAETDGNVRATYQA
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