<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01030

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMNTLPDMDTDMPDVQAPSSRPALPLLCQSPHPISRPHPNEDLINLYGLQSIANSVRRTDPVTGEKINKLRKSYEGKVKNFGLSGKNKPTDIPGELGGFMQWDEGSWYDQRIHGRELDKAESSSLMANLGRALTMNPGTLPAEEHNKWKAILGLDDGNKTPSQPANKMAAHPQMLKAQASSMRASAPASPRASHPNSIRPDRSNKKRRYDESSYTGYNESYQEDDGYSTGGLDDKRNSATKKRRKDFPTNFEASGGSSSFNNGMLGVGVKSS
Length271
PositionHead
OrganismAureobasidium melanogenum CBS 110374
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Dothideales> Saccotheciaceae> Aureobasidium.
Aromaticity0.06
Grand average of hydropathy-0.987
Instability index55.84
Isoelectric point9.14
Molecular weight29735.73
Publications
PubMed=24984952

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364151
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP01030
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.72|      35|      68|     154|     188|       1
---------------------------------------------------------------------------
  154-  188 (59.52/27.73)	DDGNKTPSQPANKMAAHPQMLKAQASSMRASAPAS
  223-  257 (57.21/26.43)	DDGYSTGGLDDKRNSATKKRRKDFPTNFEASGGSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.57|      30|      32|      74|     104|       2
---------------------------------------------------------------------------
   74-  104 (49.20/36.83)	EGKVKNFGLsGKNKPTDIPGELGGFMQWDEG
  108-  137 (49.37/32.14)	DQRIHGREL.DKAESSSLMANLGRALTMNPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.38|      20|      33|       5|      24|       4
---------------------------------------------------------------------------
    5-   24 (38.38/24.88)	PDMD.TDMPDVQ..APSSRPALP
   38-   60 (27.00/15.50)	PNEDlINLYGLQsiANSVRRTDP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01030 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNTLPDMDTDMPDVQAPSSRPALPLLCQSPHPIS
2) QRIHGRELDKAESSSLMANLGRALTMNPGTLPAEEHNKWKAILGLDDGNKTPSQPANKMAAHPQMLKAQASSMRASAPASPRASHPNSIRPDRSNKKRRYDESSYTGYNESYQEDDGYSTGGLDDKRNSATKKRRKDFPTNFEASGGSSSFNNGMLGVGVKSS
1
109
34
271










Molecular Recognition Features






MoRF SequenceStartStop




1) KKRRKDFPTNF
2) WKAILGL
240
147
250
153