<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01015

Description "Transcription cofactor, putative"
SequenceMDTLKRHLPVSGQEGLHELRKIAQRFEEKIYTAATSQSDYLRKISLKMLTMETKSQGTISNNIPPNQVGPSNQPPDPGLGIQSQVLNQGQQHPIPLPNQPQSRQQLLSQNIQNNIASQPNLPPVSGLTQTPIANGQNSNIQNMFNASQRQMQGRQQVVPQQQQQQQQQSQNPQQYLYQQQLLRQKLQMQSQQQQQQQHHQQQQQQQQQQQQQQNLLQSNQLQSSQQSVMQQPSMMQTSSLSSIQHNQQSNNGQQSTQSMLQQHPQVIRQQQQQQTSIMHQQQTPITQQSILPQQQQPQQQLMGQQANATNMQHNQILGPQNNVGDLQQSQRLLAQQNNLSNLQQQKLINQQNNLSNINQQLGNNAPGLQPQQVLGPQSGNSGMQTSQHSAHVLQQSKVPMQQQSQQGASNLLPSQPQQSQPQAPQQQLMPQVQSQPAQLQQQPNPLQRDMQQRLQASGSLLQQSGVFDQQKQIYQSQRPLPETSSNSMDSTAQTGQTSGGDWQEEVYQKIKAMKESYLPELSEMYQKIATKLHQHDSLPHQPKSDQLEKLKVFKMMLERLITFLQVSKSNISPSLKEKLGSYEKQIINFINTNRPRKISSLQPGQLPPPHMHSMSQTQPQATQVQSHENQMNTQLQTTNMQGPVPTMQQNNLTSMQHSSLSGVSTAQQNMMNTMQPSASLDLGQGNMSSLQQNSVTAPQQTNVSSLSSQAGVNMIQQNLNPLQPGSGMLQHQQLKQQQEQQMLQSQQFKQQYQRQLMQRQQMIQQQQLHQPAKQQLPAQMQTHQMQQLHQMNDVNDMKMRQGINAKPGVFQQHLASSQRSAYPHQQLKQGPFPVSSPQLLQATSPQISQHSSPQVDQQNHLPSVTKVGTPMQSANSPFIIPTPSPPLAPSPMPGDFEKPISGVSSISNVANVGHQQTGSGAAPAQSLAIGTPGISASPLLAEFTGPDGAHGNALAPSSGKSTVTEEPMDRLIKAVSSLTPAALSAAVSDISSVISMNDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGANGTRRMKRCTNATPLNVVSSAGSVNDSIKLNGMEASDLESTATSNIKKPKFEANHALLEEIREVNQRLIDTVVSISDEEVDQTAAAAAAEGAEGTIVKCSYIAVALSPSLKALYGSAQMSPIHPLRLLVPTNYPNYSPIFLDKFPVESSIENEDLSAKAKSRFSISLRGFSQPMSLKEIAKSWDVCARTVISEYAQQSGGGTFSSKYGSWEDCSTW
Length1252
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.03
Grand average of hydropathy-0.807
Instability index69.57
Isoelectric point9.21
Molecular weight138220.92
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01015
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     259.53|      45|      45|     295|     339|       7
---------------------------------------------------------------------------
  100-  140 (42.08/ 7.19)	PQSRQ..........................QLLSQ......NIQNN..IAS.QPNlppVSG.LTQTPIANGQNSNI
  145-  182 (44.17/ 8.02)	NASQR..........................QMQGR.QQVVPQQQQQQQQQS.QN...........PQQYLYQQQLL
  201-  266 (43.68/ 7.83)	QQQQQqqqqqqqqnllqsnqlqssqqsvmqqPSMMQ.TSSLSSIQHNQ.....QSN...NGQ..QSTQSMLQQHPQV
  295-  339 (81.13/22.83)	QQPQQ..........................QLMGQ.QANATNMQHNQILGP.QNN...VGD.LQQSQRLLAQQNNL
  422-  466 (48.48/ 9.75)	QAPQQ..........................QLMPQvQSQPAQLQ..QQPNPlQRD...MQQrLQASGSLL.QQSGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.33|      13|      15|     835|     849|       9
---------------------------------------------------------------------------
  863-  877 (13.62/ 6.55)	SVTK.VGTPMqsANSP
  878-  891 (19.71/ 6.05)	FIIPtPSPPL..APSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.13|      15|      17|     505|     519|      11
---------------------------------------------------------------------------
  505-  519 (26.88/19.62)	EVYQKI..KAMKESYLP
  523-  539 (23.26/15.84)	EMYQKIatKLHQHDSLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     183.90|      46|     569|     353|     400|      12
---------------------------------------------------------------------------
   59-   96 (55.51/18.66)	........ISNNIP...PNQV.GPsnQPPDPGLGIQSQVLNQGQQHPIPL
  353-  400 (79.18/34.79)	NLSNINQQLGNNAPglQPQQVLGP..QSGNSGMQTSQHSAHVLQQSKVPM
  702-  733 (49.21/15.49)	NVSSLSSQAGVN....MIQQNLNP..LQPGSGMLQHQQ............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.55|      23|     569|     571|     595|      13
---------------------------------------------------------------------------
  544-  569 (31.23/19.58)	SDQL.EKLKVFKmmlERLITFLQVSKS
  572-  595 (35.32/27.80)	SPSLkEKLGSYE...KQIINFINTNRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     364.56|     108|     113|     990|    1102|      14
---------------------------------------------------------------------------
  900-  964 (71.46/49.36)	.........................ISGVSSIS....N.VANvGHQQTGSGAAPAQSL.AIGTPGISASpllaEFTGPDGA.HG.............................N......ALAPSSGKSTVT...................
  965- 1096 (161.35/135.67)	EEPMDrlikavssltpaalsaavsdISSVISMN....DRIAG.SAPGNGSRAAVGEDLVAMTNCRLQAR....NFITQDGA.NGTRRMKRCtnaTPLNVVSSAGSVNDS.IKLN......GMEASDLESTATS..NIKKPKFEANHAlLEE
 1098- 1214 (131.74/102.36)	REVNQ..................rlIDTVVSISdeevDQTAA.AAAAEG...AEG.TIV...KCSYIAV....ALSPSLKAlYGSAQMSPI...HPLRLLVPTNYPNYSpIFLDkfpvesSIENEDLSAKAKSrfSISLRGFSQPMS.LKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.06|      29|      37|     771|     807|      15
---------------------------------------------------------------------------
  774-  792 (28.27/10.57)	...................QQL..PAQMQTHQMQQLHQMN
  793-  831 (39.49/22.41)	DVNDMKMRQGinakpgvfqQHL.aSSQRSAYPHQQLKQGP
  833-  859 (38.30/14.55)	PVSSPQLLQA............tsP.QISQHSSPQVDQQN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01015 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) METKSQGTISNNIPPNQVGPSNQPPDPGLGIQSQVLNQGQQHPIPLPNQPQSRQQLLSQNIQNNIASQPNLPPVSGLTQTPIANGQNSNIQNMFNASQRQMQGRQQVVPQQQQQQQQQSQNPQQ
2) QKQIYQSQRPLPETSSNSMDSTAQTGQTSGGDWQEE
3) QMQSQQQQQQQHHQQQQQQQQQQQQQQNLLQSNQLQSSQQSVMQQPSMMQTSSLSSIQHNQQSNNGQQSTQSMLQQHPQVIRQQQQQQTSIMHQQQTPITQQSILPQQQQPQQQLMGQQANATNMQHNQILGPQNNVGDLQQSQRLLAQQNNLSNLQQQKLINQQNNLSNINQQLGNNAPGLQPQQVLGPQSGNSGMQTSQHSAHVLQQSKVPMQQQSQQGASNLLPSQPQQSQPQAPQQQLMPQVQSQPAQLQQQPNPLQRDMQQRLQASGSLLQ
4) QRQQMIQQQQLHQPAKQQLPAQMQTHQMQQLHQMNDVNDMKMRQGINAKPGVFQQHLASSQRSAYPHQQLKQGPFPVSSPQLLQATSPQISQHSSPQVDQQNHLPSVTKVGTPMQSANSPFIIPTPSPPLAPSPMPGDFEKPISGVSSISNVANVGHQQTGSGAAPAQSLAI
5) TNRPRKISSLQPGQLPPPHMHSMSQTQPQATQVQSHENQMNTQLQTTNMQGPVPTMQQNNLTSMQHSSLSGVSTAQQNMMNTMQPSASLDLGQGNMSSLQQNSVTAPQQTNVSSLSSQAGVNMIQQNLNPLQPGSGMLQHQQLKQQQEQQMLQSQQFKQQ
51
470
187
758
592
174
505
462
929
751










Molecular Recognition Features






MoRF SequenceStartStop




NANANA