<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01013

Description U-box kinase family protein
SequenceMKVKRNSGKANYTSKHAPLFCELWFIYKGRHIWTREASETPCSLSSHAQPDIAATESLRCRSFQYGKNELPHLERLQPNSARTTVCSGIRSLDLGEIIETEATNSSKSSSCSSYCSPQNSAEVCLDKYSEVMEERINSQLIETNREAEAATDESFAELLKCRRSEVKAMEAIRKVNLFESAHAHELELRKEVEDALRVTILEQQKLVEESEDISGNLQMTMRNVALLDTRVKETTRRRDEASHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQVGAAHYNGVIGFAEELPELAEFSLSDIENATCNFSKSFEIAQGGFGCIYKGEMLGRTVAIKKFHQHNVQGPAEFHREVQILSSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQNYLFRKSNIIPLTWNIRARMIAEISSALCFLHSFKPDAIIHGDLKPETILLDSSLSCKICEFRYSRLVTEESLYSPSFHLSTEPKGAFTYTDPEFQRTGVLTPKSDIYSFGLIILQLLTGRTPVGLTVLVRHAVSCGKLSSILDSSAGEWPSSVASRLVELGLQCCAQNCRNRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLVLTPNHSIRLAIQDWLCKS
Length659
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.07
Grand average of hydropathy-0.322
Instability index49.91
Isoelectric point6.04
Molecular weight74605.07
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01013
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.70|      13|      25|      79|      91|       2
---------------------------------------------------------------------------
   79-   91 (23.21/12.18)	NSARTTVCSGIRS
  104-  116 (24.49/13.21)	NSSKSSSCSSYCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.93|      20|      25|     156|     179|       3
---------------------------------------------------------------------------
  156-  179 (20.36/33.48)	AELLKCRRsEVKamEAIRkVNLFE
  183-  202 (32.57/25.02)	AHELELRK.EVE..DALR.VTILE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.02|      38|     177|     298|     349|       4
---------------------------------------------------------------------------
  299-  338 (61.00/56.82)	ELAEFSLSDIENATCNFSKSFEIA...QGGFgcIYKGEMLGRT
  452-  492 (63.02/27.23)	KICEFRYSRLVTEESLYSPSFHLStepKGAF..TYTDPEFQRT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.43|      18|      25|     365|     383|       5
---------------------------------------------------------------------------
  365-  383 (29.25/24.28)	LQHpHLLTLLGVCPEAWSI
  393-  410 (33.17/21.58)	LQN.YLFRKSNIIPLTWNI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01013 with Med32 domain of Kingdom Viridiplantae
Unable to open file!