<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01010

Description U-box kinase family protein
SequenceMSGISASSTELKVLKNFRFLSISEHSYIGLQTSSRRSSFENSTISEEANPENYGDYVDTISLRSFDSIASAYHEPLVMQEVERLQLELQNTISMYKQVCEELVHAQSKALLLSSESLEEAKIINASLKREETLRKIAAEEKAKYLKVMKELEESKSMFAKESYERQMAELNVLRESIEKQRIVDTLLSNDRRYRKYTMDEIKIATNNLSGDLVIGEGGYGKVYKCNLDHTPVAVKVLHQDTINKKAEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNRNEKPPLPWFFRFRIIFEMACGLSFLHNSKPEPIVHRDIKPGNVLLDRNYVSKISDVGLAKLISDVVPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVIILQLITARHARGLITTIEDAITNGSFRDILDKSAGDWPLNETIELAEIGLKCTSLRCRDRPELDTEVLPLLKRLSDMANASVKIGRSSAHTPSQYYCPILQEIMDEPYIAADGFTYEHRAIKAWLSKHNVSPVTKHKLQHSELTPNHTLRSAIQEWKSEVTLLD
Length564
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.07
Grand average of hydropathy-0.360
Instability index45.55
Isoelectric point5.80
Molecular weight64178.47
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01010
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     119.96|      24|      46|      95|     118|       1
---------------------------------------------------------------------------
   72-   93 (25.41/15.33)	YH...EPLVMQEVERLQLElQNTIS
   95-  118 (35.76/24.62)	YKQVCEELVHAQSKALLLS.SESLE
  120-  143 (27.42/17.13)	AKIINASLKREETLRKIAA.EEKAK
  144-  164 (31.37/20.67)	YLKVMKEL..EESKSM.FA.KESYE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.44|      18|      24|      17|      39|       2
---------------------------------------------------------------------------
   21-   39 (28.47/26.19)	SISEHS...YIG..LQTSSRRsSF
   43-   65 (21.97/ 6.23)	TISEEAnpeNYGdyVDTISLR.SF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.13|      29|     187|     313|     361|       3
---------------------------------------------------------------------------
  328-  361 (38.69/66.14)	HRDIKpgnVLLDRNYVSKISDVGLAKliSDVVPD
  518-  546 (52.44/27.74)	HRAIK...AWLSKHNVSPVTKHKLQH..SELTPN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01010 with Med32 domain of Kingdom Viridiplantae
Unable to open file!