<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01007

Description Phytochrome and flowering time regulatory protein
SequenceMAEKQLIVAVETTAAMGPYWDTLLMDYLEKIVRCLGGNESTGQKPSGSNVEFSLVTYNTHGCYSGILVQRTGWTRDPDVFLQWLESIPFSGGGFNDAAIAEGLAEALMMFPPSQSGGLNQQNVDTNMHCILVAASNPYPLQTPVYVPQLQSLEKTESIDSNQVNQLYDAEAVAKAFPQFNISLSVVCPKQLPKIKAIYNAGKRNNRAADPPVDAKTTHFLILISEGFREARSALSRPGTNMPSNQSPVKVDAVSATPVTGAPPSSLPSVNGSIPNRQPIPAGNVTPATVKVEQVPVTSGPAFSHNPSVPRATGTGLGVPSLQTSSPSSVSQDIMTSNENAMDTKPIVSMLQPIRPVNPAQANVNILNNLSQARQVMALSGGTSMGLQSMGQTPVAMHMSNMISSGTTSSGPTGQNVFSSGPSVITSSGSLTASAQVGQNSGLSSLTSATSNSSPNTGISQPIANLQGGVSMGQQVPTMNPGNLSGAQMVQGGVNMNQNVINGLGQSGVSSGTGAMIPTPGIPQQVQSGMQPLVNNAAAANMTLTQQTASSQSKYIKVWEGSLSGQRQGQPVFITKLEGYRSSSASETLAANWPPVMQIVRLISQDHMNNKQYVGKADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQLSGQQQQQQMQQQQMQQHQQMQSQQQHLPQLQQQMQQQQQQQQLPQLQQNQQLSQIQQQIPQLQQQQQQLPQLQQQQLSQLQQQQQQLPQLQQLQHQQLPQQQQMVGAGMGQTYVQGPGGRSQMVSQGQVSSQGATNIGGGNFMS
Length820
PositionUnknown
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.04
Grand average of hydropathy-0.371
Instability index57.89
Isoelectric point8.61
Molecular weight87676.01
Publications
PubMed=22089132
PubMed=24767513
PubMed=30397259

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01007
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     163.35|      23|      23|     712|     734|       1
---------------------------------------------------------------------------
  687-  709 (41.21/12.84)	Q.QQMQQH.QQMQ.sQQQHLPQLQQQ
  712-  734 (50.00/17.24)	Q.QQQQQQLPQLQ..QNQQLSQIQQQ
  737-  758 (38.21/11.34)	QlQQQQQQLPQLQ..Q.QQLSQLQQ.
  759-  780 (33.93/ 9.20)	....QQQQLPQLQqlQHQQLPQQQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.49|      23|      23|     403|     425|       2
---------------------------------------------------------------------------
  376-  400 (24.41/ 6.78)	MALSGG.TSMGlqSMGQTPVAMHMSN
  401-  423 (42.80/18.15)	MISSGT.TSSG..PTGQNVFSSGPSV
  424-  444 (24.29/ 6.71)	ITSSGSlTASA..QVGQN...SGLSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     152.63|      37|      37|     253|     289|       3
---------------------------------------------------------------------------
  188-  214 (21.57/ 6.20)	...............PK.........QLPKIKaiynaGKRNN..RAAD..................P.....PVDA
  228-  250 (36.20/16.24)	REARSALSRP.....GT.........NMPS...........N..QSPV..................K........V
  253-  289 (67.49/37.72)	VSATPVTGAP.....PS.........SLPSVN.....GSIPN..RQPI..................PAGNVTPATV
  291-  359 (27.36/10.18)	VEQVPVTSGPafshnPSvpratgtglGVPSLQ.....TSSPSsvSQDImtsnenamdtkpivsmlqPIRPVNPA..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     139.65|      37|      38|     460|     496|       4
---------------------------------------------------------------------------
  460-  494 (63.75/33.36)	..QPIAN.L.QGGVS..MGQQVPTMNPGNLSGAQMVQGG....VN
  495-  534 (39.99/17.75)	MNQNVINgLgQSGVSsgTGAMIPT..PGI...PQQVQSGmqplVN
  543-  567 (35.91/15.07)	LTQ.......QTASS..QSKYIKVWE.GSLSGQR..Q........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.74|      14|      18|     786|     799|       5
---------------------------------------------------------------------------
  786-  799 (28.57/14.10)	GQTYVQGP...GGRSQM
  803-  819 (22.18/ 9.16)	GQVSSQGAtniGGGNFM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.17|      18|      49|     617|     638|       6
---------------------------------------------------------------------------
  617-  638 (22.36/21.75)	DFLVFRamnPHgFLGQLQEKKL
  668-  685 (32.82/16.36)	DMVVFK...PQ.LSGQQQQQQM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01007 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MALSGGTSMGLQSMGQTPVAMHMSNMISSGTTSSGPTGQNVFSSGPSVI
2) RSALSRPGTNMPSNQSPVKVDAVSATPVTGAPPSSLPSVNGSIPNRQPIPAGNVTPATVKVEQVPVTSGPAFSHNPSVPRATGTGLGVPSLQTSSPSSVSQDIMTSNENAMDTKPIVSMLQPIR
3) SGSLTASAQVGQNSGLSSLTSATSNSSPNTGISQPIANLQGGVSMGQQVPTMNPGNLSGAQMVQG
4) VGAGMGQTYVQGPGGRSQMVSQGQVSSQGATNIGGGNFMS
376
231
427
781
424
354
491
820










Molecular Recognition Features






MoRF SequenceStartStop




NANANA