<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01004

Description Heat shock cognate 70 kDa protein
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVSVQSDMKLWPFKVIPGPADKPMIVVNYKAEEKQFSAEEISSMVLMKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPTAAAIAYGLDKKATSTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIASKLSADDKKKIEDAIEGAIQWLDGNQLGEADEFEDKMKELEGICNPIIARMYQGAGGDAGGAMDEDGPTAGSGSGAGPKIEEVD
Length649
PositionUnknown
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.06
Grand average of hydropathy-0.423
Instability index32.11
Isoelectric point5.11
Molecular weight71080.68
Publications
PubMed=22089132
PubMed=24767513
PubMed=30397259

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01004
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      38|      55|       1
---------------------------------------------------------------------------
   16-   33 (19.08/11.24)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.67/25.05)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.52/16.77)	NQvaMNPTNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     285.47|      74|     189|     144|     218|       2
---------------------------------------------------------------------------
   83-  158 (88.69/55.37)	....DVSVQSDMKLwpFKVIPGPADKPmivVNYKAE.EKQFSAEEIS..............SMVLMKMKEIAEAYL..gTTIKNAVVTVPAYFNDSQ
  160-  231 (105.07/64.87)	QATKDAGVISGLNV..LRIINEPTAAA...IAYGLD.KKATSTGEKN..............VLIFDLGGGTFDVSL...LTIEEGIFEVKATAGD..
  354-  441 (91.72/52.93)	QLLQD..FFNGKEL..CKSIN.PD.EA...VAYGAAvQAAILSGEGNekvqdlllldvtplSLGLETAGGVMTVLIprnTTIPTKKEQVFSTYSDNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     351.94|     118|     280|     233|     353|       3
---------------------------------------------------------------------------
  233-  353 (185.43/124.02)	HLGGEDFDnRMVNHfVQEFK...RKNKKDISGNpRALR....RLRTAC..ERAKRTLSSTAQTTIE..IDSLFEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSV..HDVVLVG.GSTRIPKVQ
  515-  646 (166.51/99.11)	RLSKEEIE.KMVQE.AEKYKsedEEHKKKVEAK.NALEnyayNMRNTIkdDKIASKLSADDKKKIEdaIEGAIQWLDGNQLGEADEFEDKMKELEGICNPIIARMYQGAGGDAGGAmdEDGPTAGsGSGAGPKIE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01004 with Med37 domain of Kingdom Viridiplantae
Unable to open file!