<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP01001

Description Uncharacterized protein
SequenceMKSVVNHMRLRMDGIDHHRSGREAYMDVNKESQYLSPNSKVTGDLLPLRPNWPPEMHIVRIISQDHMNNKKYVGEADFLVFRARNTHGFLGLLQEKKLDKLVSKSQLSSLQQQQHQQMQSQHTTSAQSNYISVWEGSLLGLRHGQPKFISKLEAYRSSSSSETLVANWSPEMQIVQLIPQDHMNNLQQYVGNADFLVFRAMNPHGFLGQLQEKKLCAVIQLPSQTLLLSVSDIACCRLIGMLFSRDMFVFNQQQQMQQMQQMQQQHQLSQLQLQLSQLQLQHQQLLQQPQMDGHFQMVSQGHVSSQGATNIEEGNLMS
Length318
PositionUnknown
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.06
Grand average of hydropathy-0.516
Instability index59.95
Isoelectric point8.41
Molecular weight36503.28
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP01001
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     297.56|      62|     115|      48|     109|       1
---------------------------------------------------------------------------
   39-   69 (31.19/ 8.43)	.........................................SKvtGDLLPLRP.....................NWPPEMHIVRIISQDHMNN
   70-  129 (107.21/43.71)	KKY..VGEADFLVFRARNTHGFLGLLQEK...KL...DKLVSK..SQLSSLQQ.....................QQHQQMQSQHTTSAQ..SN
  130-  185 (75.24/28.87)	..YisVWEGSLLGLR....HG.....QPKfisKL...EAYRSS..SSSETLVA.....................NWSPEMQIVQLIPQDHMNN
  187-  266 (83.92/32.90)	QQY..VGNADFLVFRAMNPHGFLGQLQEK...KLcavIQLPSQ..TLLLS...vsdiaccrligmlfsrdmfvfNQQQQMQQMQQMQQQH...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.21|      14|      15|     270|     283|       2
---------------------------------------------------------------------------
  270-  283 (23.67/ 9.49)	QLQLQ.....LSQLQLQHQ
  288-  306 (19.54/ 6.73)	QPQMDghfqmVSQGHVSSQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP01001 with Med25 domain of Kingdom Viridiplantae
Unable to open file!