<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00996

Description "Mediator of RNA polymerase II transcription subunit 8, putative"
SequenceMLSTKLLPEMETEDTLKRDQLLQGMQNLPIATQIDKLKARIDMIAAACEGAEKVLADTRKAYCFGTRQGPAIAPTLDKGQAAKIQEQENLLRAAVNVGEGLRIPGDQRHITASLPMHLADAFTVNESAQSFPDGSSNNVYMKNTPLSSNSMGGQNSLLQTSGSQLLGRSAASPSAATSATSFDNTTASPIPYANSPRSTTNMMNTPSPQQQTPQPQPQQLTAQQQQQQRQKLMQQLPQQQQQQLLAQQQYRQSAMQQGLGQLHGQHQMQFSPQLGHQQFQGRQLSSAHMQHSIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMIPNISAGITSQSLLPRMQFGLSGNNPQRSHPSHMLSDQMFNMGGGNPGGMMSIQQQQQQQQQQQQQHSSQGAFGGMASNAQNLQSGMMTLQNAQQNHPNFTQQRQQNQQ
Length439
PositionHead
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.04
Grand average of hydropathy-0.809
Instability index57.96
Isoelectric point9.51
Molecular weight47937.88
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00996
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     415.92|     131|     159|     134|     283|       1
---------------------------------------------------------------------------
  134-  283 (205.42/65.34)	GSSNnvymkntpLS.SNSMGGQNsllQTSG...SQLLgrSAASPSAAT...SATSFDNTTASPIPY......ANSP.RSTTNMMntPSPQQ.QTPQPQPQQLTAQQQQQQRQKlmQQLPQQQQQQLLAQQQYRQSAMQQGLGQLhgQHQMQFSPQLGHQQFQGRQ
  294-  439 (210.50/48.55)	GQSQ........LNqGNQMTRLN...QFSGpanSALF..SAAQTTPNTqmiPNISAGITSQSLLPRmqfglsGNNPqRSHPSHM..LSDQMfNMGGGNPGGMMSIQQQQQQQQ..QQQQQHSSQGAFGGMASNAQNLQSGMMTL..QNAQQNHPNFTQQRQQNQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.99|      18|      40|      24|      41|       2
---------------------------------------------------------------------------
   24-   41 (31.88/19.90)	GMQNLP.IATQIDKLK.ARI
   65-   84 (24.11/13.28)	GTRQGPaIAPTLDKGQaAKI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00996 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFTVNESAQSFPDGSSNNVYMKNTPLSSNSMGGQNSLLQTSGSQLLGRSAASPSAATSATSFDNTTASPIPYANSPRSTTNMMNTPSPQQQTPQPQPQQLTAQQQQQQRQKLMQQLPQQQQQQLLAQQQYRQSAMQQGLGQLHGQHQMQFSPQLGHQQFQGRQLSSAHMQHSIGQSQLNQGNQMTRLNQFSGPANSALFSAAQTTPNTQMIPNISAGIT
2) QSLLPRMQFGLSGNNPQRSHPSHMLSDQMFNMGGGNPGGMMSIQQQQQQQQQQQQQHSSQGAFGGMASNAQNLQSGMMTLQNAQQNHPNFTQQRQQNQQ
121
341
339
439










Molecular Recognition Features






MoRF SequenceStartStop




NANANA