Description | Mediator of RNA polymerase II transcription subunit 36a |
Sequence | MAPPRGRGGFGGRGGDRGGRGGGGGRGFGGGRGGDFKPRGGGRGFGGGRGARGGGRGRGGGRGGMKGGSKVVVEPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFSSEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAE |
Length | 309 |
Position | Unknown |
Organism | Medicago truncatula (Barrel medic) (Medicago tribuloides) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago. |
Aromaticity | 0.07 |
Grand average of hydropathy | -0.395 |
Instability index | 27.57 |
Isoelectric point | 10.02 |
Molecular weight | 32657.83 |
Publications | PubMed=22089132 PubMed=24767513 |
Annotated function |
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GO - Cellular Component | box C/D RNP complex GO:0031428 IBA:GO_Central Cajal body GO:0015030 IBA:GO_Central small-subunit processome GO:0032040 IBA:GO_Central |
GO - Biological Function | histone-glutamine methyltransferase activity GO:1990259 IBA:GO_Central RNA binding GO:0003723 IBA:GO_Central rRNA methyltransferase activity GO:0008649 IBA:GO_Central |
GO - Biological Process | box C/D RNA 3'-end processing GO:0000494 IBA:GO_Central histone glutamine methylation GO:1990258 IBA:GO_Central rRNA methylation GO:0031167 IBA:GO_Central |
Binary Interactions |
Repeats | >MDP00992 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 94.85| 15| 16| 20| 34| 1 --------------------------------------------------------------------------- 6- 24 (29.85/ 7.73) GRGGFGGRGGdrggRGGGG 25- 41 (30.25/ 7.92) GRGFGGGRGG..dfKPRGG 42- 56 (34.76/10.11) GRGFGGGRGA....RGGGR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.03| 17| 17| 190| 206| 2 --------------------------------------------------------------------------- 170- 193 (20.30/11.92) TGVVYAVEfshrsgrDLVNMAKKR 194- 210 (30.72/21.26) TNVIPIIE.......DARHPAKYR --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) GGGGGRGFGGGRGGDFKPRGGGRGFGGG 2) MAPPRGRGGFGGRGGDRGG | 21 1 | 48 19 |
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