<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00987

Description Uncharacterized protein
SequenceMQRDKQEANIPTERWKIKENRKKTVKKIMEELIRHGHLTDKSSFPKLAQLVQTFEEKVNVSSKTEAEYISVVTAKLHSIRAHARKAPEAKKLLTNPSAEAKNLVANHSAEAKNLLTSPSAETKNPSTSPLAEAKSLLTIPSASGTDENVDVQEQIYQRLQFLKKKYYPLIHAIHRRSCRALQGESPTRVLNSRQVENFRNHKRAIEDIFPLFELSKSQFTNDMKDRAIKADQYIQYLVKIFMQSNKQRSPDVQSKQQNNTFIQDHRVAMPTGSSQHGIINQPSVVKGPGNAVEQQTNISLQGIGVSNNAPRISETEAFGKHTNTQRISPLIEEINNHNQVSQKPTLGSEELSPEMQRLIKAMTSISPQARRAAVGDIEKVVRMNDEIPTFISPEGWKMRPVFDPTTFDTPTVSASMFNGFNQFNDAVESDLNSPEALRAAFGDIEEVVRLNDEIQPFISPVGGVSEGWNMRRVFDPTAFGTPTVSPSMFNSFNQFNDAVESDLNSPEALRAAFGDIEEVVRLNDEMQPFISPVGGVPEGWKMRRVFDATPFDTPGVSASMCNGFNQFTDAAAASDMNSLTKRRKCSQTLEIQNVLAEIKDINNRLFDCEVVIGEKENVERLVGLASEQVGGLLVKIMYNAVTINQNLVSHFTSDKKSLINPLRLLIPASYPSSSLIFLDELPLQDSEDFRDLFERAKGKLRVNLESMKQPWLIKDVARAWEGCAREAILEYAHVNGGGTFTSMYGGWEFC
Length750
PositionTail
OrganismMedicago truncatula (Barrel medic) (Medicago tribuloides)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> Hologalegina> IRL clade> Trifolieae> Medicago.
Aromaticity0.07
Grand average of hydropathy-0.489
Instability index52.34
Isoelectric point6.45
Molecular weight84002.07
Publications
PubMed=22089132
PubMed=24767513

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00987
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     174.94|      24|      24|     410|     433|       1
---------------------------------------------------------------------------
  366-  386 (20.10/ 8.65)	SPQARRAAVGDIEK...vvrMND.......E
  409-  432 (45.21/29.06)	TPTVSASMFNGFNQ......FNDA.VESDLN
  433-  454 (17.52/ 6.55)	SPEALRAAFGDIEE...vvrLNDE.I.....
  482-  504 (39.73/24.60)	.PTVSPSMFNSFNQ......FNDA.VESDLN
  505-  526 (20.08/ 8.64)	SPEALRAAFGD...ieevvrLNDE......M
  554-  577 (32.29/18.56)	.PGVSASMCNGFNQ......FTDAaAASDMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     206.44|      30|      71|     447|     481|       2
---------------------------------------------------------------------------
  302-  320 (19.07/ 6.57)	................GIGVSNNAPRISETEAFGK
  327-  348 (27.78/12.80)	...........ISPL..IEEINNHNQVSQKPTLGS
  380-  408 (41.77/22.81)	VVRmndeiPTFISP.....EGWKMRPVFDPTTFD.
  447-  481 (59.71/35.64)	VVRlndeiQPFISPVGGVSEGWNMRRVFDPTAFGT
  519-  553 (58.11/34.50)	VVRlndemQPFISPVGGVPEGWKMRRVFDATPFDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.14|      20|      21|      83|     102|       3
---------------------------------------------------------------------------
   83-  102 (36.64/21.53)	ARKAP..EAKKLLTNPSAEAKN
  105-  124 (36.89/21.72)	ANHSA..EAKNLLTSPSAETKN
  125-  142 (19.61/ 8.39)	PSTSPlaEAKSLLTIPSA....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.85|      16|      21|     190|     209|       4
---------------------------------------------------------------------------
  190-  206 (22.61/25.48)	LNSRQVENfRNHKRAIE
  214-  229 (26.24/12.64)	LSKSQFTN.DMKDRAIK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00987 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APRISETEAFGKHTNTQRISPLIEEINNHNQVSQKPTLGSEELSPEMQRLIKAMT
2) ARKAPEAKKLLTNPSAEAKNLVANHSAEAKNLLTSPSAETKNPSTSPLAEAKSLL
3) QRSPDVQSKQQNNTFIQDHRVAMPTGSSQHGIINQPSVVKGPGNAVE
309
83
247
363
137
293










Molecular Recognition Features






MoRF SequenceStartStop




NANANA