<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00941

Description Uncharacterized protein
SequenceMDSNSWRAPQGQMAQGPPQGGQVGGSGEVSAVPNPAPPATIDSGDWRTQLQADSRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNPMANPLQANAANASKNPPDQAVHGMQSQIQNQPLPMPVVSSQSQSRQQLLPQNMQTNMTSTGVQNSAILASTLPTAGNLQQAPMPNIGQNSNLQNMQSVPSVSQNPVGSSMGQVMPSNVFTNSQRQMQAGQQQVVPLQQHQQTQNPQHYLYQQQLQHQYMKQKLQQGGGMAQPLMQSHIQQQQQQNLLQPTQIQTSQQVVMQPSVMQSAPLSGLQQNQQSSMQQVTQPVIQQQSQAVLRQQQQQQQQQQQQSQQASMLHQQQTSMAQQPLLPAAQQPHQQQQQLIGQQPGATNIQHNQLIGQQNSMPDMQQQQQRLIGQQNNMQQQQQLIGQQNSLSSMHQQQLAPQSSVSGLHQQSMLGTQPGNSALPTSQHSVVMLQQSKVAVQQQMQQNATALLPSQNQQPQQPQQQMVSQIQAQPGGLQHMQQQSNALQRDMQQKIQPTGSLLQQQNVVEQQKQLFQPQRAHPEASSTSLDSTAQTGNASGGDWQEEVYQKIKSMKDMYFLELNDMYMKIAGKLQQHDSLPQQPRNEQLEKLKFFKLMLERLIGFLRCTKNDIQISHKEKLASIEKQIINILTTNRPRRPVSLQQVQLAQQQMSNMQHSQPQTQIPQIQPQENQMNQQMQPMNVQSSITPMQPSSLTSLQQNTLSSVPSVSNLQQNMMSTLQPASTLDPGQSNTHPLQQVAISSLQQNTASGPQTMNINSLSSQSGMTALQSNLNNALQPNSTMIQNQQLKKQEQQMLQTQQLKQQLHPRQMQQQLLQRQQLMQQQQQQQQHQQMKPQQQPSQLPGHQMSPLHQVTDSSDLKVRPQISVKSSVFQQFHTNSQRAAYHHQQLKSGSPFPISSPQVLQAASPQVPPHGSPQIDQQSMLTSIAKTGTPLQTANSPFVVPSPSTPLAPSPMPGESEKLNSGISSLSNAGNIGPSHAITVSAAAQSLAIGTPGISASPLLAEFTSLDGAHVSTSTAMPCKPHTVEKPHERLIKAVKSISNKALVASIDDISSVVSMVDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFFTQDGPTGTKKMRRSTSAMPSNVVSPVGSVNDSMRQLNGSDAFELESTATSSIKRARNEANHALVEEIHEINRRLIDTVVDISNEDVDPTAVAAAADGGEGTIVKCSFSAVALSPNLKSQYASARTSPIQPLRLLIPTNYPDSSPILLDKYPVEVSKEYEDLSIKARSKFSISLRSLSQPMSLLEMARTWDICARAVISEFAQQSGGGTFSSKYGTWENCVSAVL
Length1383
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.03
Grand average of hydropathy-0.684
Instability index71.15
Isoelectric point9.38
Molecular weight152090.44
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00941
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     409.66|      43|      44|     365|     407|       1
---------------------------------------------------------------------------
  272-  308 (52.96/11.53)	QQLQHQ..Y....MKQKL..QQGGGMA.QPLMQS.HIQ.Q.QQQQNLL...Q
  365-  407 (86.70/25.04)	QQQQQQ..S....QQASMLHQQQTSMAQQPLLPA.AQQPH.QQQQQLIGQ.Q
  412-  439 (46.89/ 9.10)	NIQHNQ............LIGQQNSM......PD.MQ....QQQQRLIGQ.Q
  442-  481 (47.35/ 9.29)	MQQQQQliG....QQNSL.....SSMHQQQLAPQ.SSVSG.LHQQSMLGT.Q
  487-  533 (41.55/ 6.96)	LPTSQH..SvvmlQQSKVAVQQQMQQNATALLPSqNQQPQ.QPQQQMVSQ..
  700-  741 (50.39/10.51)	PRRPVS..L....QQVQ.LAQQQMSNMQHS.QPQ.TQIPQiQPQENQMNQ.Q
  743-  785 (40.04/ 6.36)	QPMNVQ..S....SITPMQPSSLTSL.QQNTLSS.VPSVS.NLQQNMMSTlQ
  887-  911 (43.78/ 7.86)	QQQQQQ..Q....Q.....HQQ........M......KPQ.QQPSQLPGH.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.15|      26|      30|     824|     853|       2
---------------------------------------------------------------------------
  324-  352 (32.35/10.59)	V.MQSAPLSGLQQNQQS..SMQQvtQPVIQqQ
  837-  865 (31.80/ 7.39)	LnNALQPNSTMIQNQQLkkQEQQ..MLQTQ.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.77|      29|      30|     183|     211|       3
---------------------------------------------------------------------------
  188-  219 (35.24/ 9.97)	LASTLPTAGNLQQAPMP.NIGQNSNlQNmqSVP
  220-  249 (34.85/ 9.76)	SVSQNPVGSSMGQV.MPsNVFTNSQrQM..QAG
  794-  814 (31.52/ 8.01)	QSNTHP....LQQVAIS.SL....Q.QN..TAS
  989- 1015 (29.16/ 6.77)	LTSIAKTGTPLQTANSPfVVPSPS......TPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     284.11|      95|     109|    1108|    1215|       4
---------------------------------------------------------------------------
  535-  592 (48.75/11.95)	..................................................................QAQPGGLQHMQQQSNALQRDMqqkIQPTGSllqqqnVVEQQKQLFQPQRAHPEASSTS
 1108- 1209 (152.06/82.33)	NKALVASIDDIS.....SVVSM....VDRIAGSAPGNGsraavGEDlvAMTKCRLQA....RNFFTQDGPTGTKKMRRSTSAMPSNV...VSPVGS......VNDSMRQLNGSDAFELESTATS
 1219- 1304 (83.30/32.09)	NHALVEEIHEINrrlidTVVDIsnedVDPTAVAAAADG.....GEG..TIVKCSFSAvalsPNLKSQYASARTSPIQPLRLLIPTNY.pdSSPI..............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.10|      16|     100|     947|     965|       5
---------------------------------------------------------------------------
  947-  965 (24.11/21.86)	AAyhHQQLKSGSPfPIS.SP
 1050- 1066 (24.99/10.61)	AA..AQSLAIGTP.GISaSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.54|      13|      46|     108|     128|       7
---------------------------------------------------------------------------
  114-  126 (22.55/12.91)	ETKSQNPMANPLQ
  130-  142 (21.00/ 6.29)	ANASKNPPDQAVH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.34|      14|      44|     623|     646|       9
---------------------------------------------------------------------------
  623-  638 (19.84/32.21)	FLELndMYMKIAGKLQ
  657-  670 (24.50/ 7.11)	FFKL..MLERLIGFLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.78|      15|     108|      51|      65|      11
---------------------------------------------------------------------------
   51-   65 (25.65/12.09)	QADSRQRIVNKIMET
  161-  175 (27.12/13.25)	QSQSRQQLLPQNMQT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.32|      21|      44|    1023|    1048|      12
---------------------------------------------------------------------------
 1023- 1044 (30.53/21.28)	ESEKLNSGISSLSNAGNIGPsH
 1070- 1090 (37.79/22.58)	EFTSLDGAHVSTSTAMPCKP.H
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00941 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISLKMLTMETKSQNPMANPLQANAANASKNPPDQAVHGMQSQIQNQPLPMPVVSSQSQSRQQLLPQNMQTNMTSTGVQNSAILASTLPTAGNLQQAPMPNIGQNSNLQNMQSVPSVSQNPVGSSMGQVMPSNVFTNSQRQMQAGQQQVVPLQQHQQT
2) MDSNSWRAPQGQMAQGPPQGGQVGGSGEVSAVPNPAPPATIDSGDWRTQLQADSRQRIVNKIMETL
3) NFFTQDGPTGTKKMRRSTSAMPSNVVSPVGSVN
4) PLQTANSPFVVPSPSTPLAPSPMPGESEKLNSGISSLS
5) PVSLQQVQLAQQQMSNMQHSQPQTQIPQIQPQENQMNQQMQPMNVQSSITPMQPSSLTSLQQNTLSSVPSVSNLQQNMMSTLQPASTLDPGQSNTHPLQQVAISSLQQNTASGPQTMNINSLSSQSGMTALQSNLNNALQPNSTMIQNQQLKKQEQQMLQTQQLKQQLHPRQMQQQLLQRQQLMQQQQQQQQHQQMKPQQQPSQLPGHQMSPLHQVTDSSDLKVRPQISVKSSVFQQFHTNSQRAAYHHQQLKSGSPFPISSPQVLQAASPQVPPHGSPQIDQQSMLTSIAKTG
6) QQKQLFQPQRAHPEASSTSLDSTAQTGNASGGDWQEE
7) QQMQQNATALLPSQNQQPQQPQQQMVSQIQAQPGGLQHMQQQSNALQRDMQQKIQPTGSLLQ
8) QQQQSQQASMLHQQQTSMAQQPLLPAAQQPHQQQQQLIGQQPGATNIQHNQLIGQQNSMPDMQQQQQRLIGQQNNMQQQQQLIGQQNSLSSMHQQQLAPQSSVSGLHQQSMLGTQPGNSALPTSQHSVVMLQQSKV
106
1
1157
998
703
574
506
367
262
66
1189
1035
996
610
567
502










Molecular Recognition Features






MoRF SequenceStartStop




NANANA