<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00940

Description Uncharacterized protein
SequenceMAKTSGPLDKWRDYFLTANSDIFCIIERAITIASIDSPKEFKLRRDRIAELLFTCKVTKCFGCDKLELAVPNDGCDGEEEEEEEEEDKCSSEFGRRTEDEEVRTKESKVNCNEIDNHGDGDAEELERNLNHQVSTYSYGDAEALSDEIEEESQNFGEVKRIKEILENSEDEPDSVIFDSLRRLQIMALSVEVLKSTEIGKSVNALRRHGSKQIRQLAKTLVDGWVTMVDEWMNATAAIANEGTPESMKKSDLVNEEEGLPSPPLDEGFLFASQNISMELSQFFDGMDDDGNPQNSGEFNKNRDNGRKPSLENHTVPRQKQQIRGNLISPPKDRKGEQMKKQEAVTKKQEAVMKKQAAVAKPNKPSFGESGPGRPAKPSVDQYHMKPQQKSDKGTSQKRELPSQPNKLRSSDDAAVRLKLEASKRKLQERYQEAENAKRQRTVQVMELHDIPKQNLGHRNPNMRPGNFNRHWGRR
Length474
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.05
Grand average of hydropathy-1.045
Instability index56.98
Isoelectric point5.47
Molecular weight53836.41
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00940
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     195.35|      63|      66|     259|     324|       1
---------------------------------------------------------------------------
  259-  324 (101.97/73.58)	LPSPPLD.EGFLFASQN.ISMELSQFFDGMDDDGNPqNSGEFNKNrDNGR..KPSLEN.HTVPRQKQQiRG
  326-  393 (93.37/55.34)	LISPPKDrKGEQMKKQEaVTKKQEAVMKKQAAVAKP.NKPSFGES.GPGRpaKPSVDQyHMKPQQKSD.KG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.43|      18|      18|     113|     130|       2
---------------------------------------------------------------------------
  113-  130 (31.22/18.41)	EIDNHGDGDAEELERNLN
  132-  149 (26.21/14.29)	QVSTYSYGDAEALSDEIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.06|      12|      18|      77|      88|       3
---------------------------------------------------------------------------
   77-   88 (20.49/10.67)	GEEEEEEE...EEDK
   94-  108 (15.57/ 6.34)	GRRTEDEEvrtKESK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00940 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SQFFDGMDDDGNPQNSGEFNKNRDNGRKPSLENHTVPRQKQQIRGNLISPPKDRKGEQMKKQEAVTKKQEAVMKKQAAVAKPNKPSFGESGPGRPAKPSVDQYHMKPQQKSDKGTSQKRELPSQPNKLRSSDDAAVRLKLEASKRKLQERYQEAENAKRQRTVQVMELHDIPKQNLGHRNPNMRPGNFNRHWGRR
2) TAAIANEGTPESMKKSDLVNEEEGLPSPPLDEG
280
235
474
267










Molecular Recognition Features






MoRF SequenceStartStop




1) FNRHWGRR
2) MKKQAA
3) SQNISMELSQF
467
352
272
474
357
282