<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00939

Description Uncharacterized protein
SequenceMDSSSWRAPQGQMAQGPPQGGQAGGGGEVSAVPNAPPPATIDSGDWRTQLQADSRQRIVNKICAHMCRMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNPMANPLQANAATASKNPPDQAVHGMQSQIQNQQHPMPVVSSQSQSRQQLLPQNMQTNMTSTGVQNSAILASTLPTAGNLQQAPMPNIGQNSNLQNMQSVPSVSQNPVGSSMGQVMPSNVFTNSQRQMQARQQQVVPLQQQQQTQNPQHYLYQQQLQHQYMKQKLQQGGAMAQPLMQSHIQQQQNLLQPTQIQTSQQAVMQPSVMQSAPLSGLQQNQQSSMQQVTQPVIQQQSQAVLRQQQQQQQQQQQQSQQASMLHQQQTSMAQQPLLPAAQQPQQQQQQLIGQQPGATNIQHNQLIGQQNSMPDMQQQQQRLIGQQNNIQHQQLIGQQNSLSSMHQQQLAPQSSVSGLHQQSMRGTQPGNSAMPTSQHSVVMLQQSKVAVQQQMQQNATALLPSQNQQPQQPQQQMVSQIQAQPGGLQHMQQQSNALQRDMQQKIQPTGSLLQQQNVVEQQKQLFQPQRAHPEASSTSLDSTAQTGNASGGDWQEEVYQKIKSMKDMYFLELNDMYMKIAGKLQQHDSLPQQPRNEQIEKLKFFKLMLERLIGFLRCTKNDIQISHKEKLASIEKQIINILSTNRPRRPVSLQQVQLAQQQMSNMQHSQPQTQIPQMQPQENQMNQQMQPMNVQSSITPMQPNSLTSLQQNTLSSVPPVSNLQQNMMSTLQPASTLDPGQSNTHPLQQVAISSLQQNTASGPQTMNINSLSSQSGMTALQSNLINALQPNSTMIHNQQLKQQEQQMLHTQQLKQQLHPRQLQQQLLQRQQLMQQQQQQQQQQQLQQQPQQQQQQHQQMKPQQQPSQLPGHQMSPLHQVTDSSDLKVRPQISVKTGVFQQHHTNSQRAAYHHQQLKSGSPFPISSPQVLQAASPQVPPHASPQIDQQSMQTSIAKTGTPLQAANSPFVVPSPSTPLAPSPMPSESEKLNSGISSLSNAGNIGPSHATTVSAAAQSLAIGTPGISASPLLAEFTSLDGAHVNTSTAMPCKPHTVEKPHERLIKAVQSISNKALVASVDDISSVVSMVDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFFTQDGPTGTKKMRRSTSAMPSNVVSSVGSVNDSMRHLNSSDAFELESTATSSIRRPRNEANHALVEEIHEINRCLIDTVVDISDEDVDPIAVAAADGGEGTIVKCSFSAVALSPNLKSQYASARTSPIQPLRLLIPTNYPDSSPILLDKYPVEVSKEYEDLSIKARSKFSISLRSLSQPMSLSEMARTWDICARAVISEFAQQSGGGTFSSKYGTWENCVSAV
Length1398
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.03
Grand average of hydropathy-0.718
Instability index74.09
Isoelectric point9.28
Molecular weight154108.44
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00939
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     126.32|      31|      31|     758|     788|       3
---------------------------------------------------------------------------
  330-  362 (34.51/ 6.38)	QSAPLSGLQQNQQSSMQQVTQpvIQQQSQAVLR
  376-  406 (36.53/ 7.31)	QQASMLHQQQTSMAQQPLLPA..AQQPQQQQQQ
  758-  788 (55.28/15.98)	QPNSLTSLQQNTLSSVPPVSN..LQQNMMSTLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     214.30|      44|      45|     975|    1018|       4
---------------------------------------------------------------------------
  130-  165 (35.87/ 6.54)	..PLQANAATASKNPP..DQavHGMQS..........QIQN........QQ.......HPMP.VVS...........
  166-  225 (35.04/ 6.17)	SQSQSR.QQLLPQN....MQ..TNMTStgvqnsailaSTLPTaGN...LQQ.......APMPnIGQnsnlqnmqsvP
  854-  886 (38.39/ 7.68)	QQLKQQEQQMLHTQ..QLKQ..QLHPR..........QLQQQ.....LLQR.......Q..................
  983- 1028 (67.65/20.88)	QVLQAASPQVPPHASPQIDQ..QSMQT..........SIAKT.GT..PLQA.....anSPFV.VPS..........P
 1029- 1077 (37.35/ 7.21)	STPLAPSPM..PSESEKLN....SGIS..........SLSNA.GNigPSHAttvsaaaQSLA.IGT..........P
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.83|      25|      25|     530|     554|       5
---------------------------------------------------------------------------
  523-  547 (45.11/12.70)	NQQPQQPQQQMVSQIQAQPGGLQ..HM
  548-  568 (32.41/ 6.57)	QQQSNALQRDMQQKIQ..PTG....SL
  906-  929 (32.31/ 6.53)	.QQQQ..QQHQQMKPQQQPSQLPghQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     253.12|      49|      99|     699|     747|       6
---------------------------------------------------------------------------
  227-  291 (60.22/13.17)	VSQNPvGSSmgqvmpsnvftNS..QRQMQA..RQQQVVPLQQ...QQ...QT.QNPQHylyqqQLQH.......QYMKQKLQQ
  441-  485 (53.24/10.67)	......GQQ...........NN..IQHQQLigQQNSLSSMHQ...QQlaPQS.SVSGL.....HQQS.........MRGT.QP
  699-  747 (89.96/23.80)	STNRP.RRP...........VS..LQQVQL..AQQQMSNMQH...SQ..PQT.QIPQM.....QPQE.......NQMNQQMQP
  791-  846 (49.70/ 9.41)	STLDP.GQS...........NThpLQQVAI.......SSLQQntaSG..PQTmNINSL.....SSQSgmtalqsNLIN.ALQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     128.78|      40|      42|    1148|    1189|       7
---------------------------------------------------------------------------
 1148- 1180 (49.48/27.82)	..........SA.PGNGSRAAVGEDLVAMTKCRLQARNFFTQDG
 1182- 1222 (50.11/32.37)	TGTKKMRrstSAmPSNVV.SSVGS..VNDSMRHLNSSDAFELES
 1223- 1249 (29.19/10.70)	TATSSIR.....rPRNEANHALVEEIHEINRC............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     101.85|      24|      25|    1348|    1371|       8
---------------------------------------------------------------------------
 1326- 1343 (19.57/ 9.25)	......PVEVSKEYEDLSIKARSK
 1348- 1371 (41.29/30.47)	LRSLSQPMSLSEMARTWDICARAV
 1375- 1398 (40.98/30.17)	FAQQSGGGTFSSKYGTWENCVSAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.56|      36|      42|     611|     649|       9
---------------------------------------------------------------------------
  611-  649 (58.66/52.61)	QEEVYQKIKSMKDMY.....FLEL..NDMYMKIAGKLQqhdSLPQQ
  651-  693 (50.90/35.76)	RNEQIEKLKFFKLMLerligFLRCtkNDIQISHKEKLA...SIEKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.35|      26|      48|      52|      78|      10
---------------------------------------------------------------------------
   52-   78 (45.01/42.23)	ADSRQRIVNKICAHMCRMETlKRHLPF
  102-  127 (45.33/36.61)	ATSQSDYLRKISLKMLTMET.KSQNPM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00939 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FFTQDGPTGTKKMRRSTSAMPSNVVSSVGSVN
2) ISLKMLTMETKSQNPMANPLQANAATASKNPPDQAVHGMQSQIQNQQHPMPVVSSQSQSRQQLLPQNMQTNMTSTGVQNSAILASTLPTAGNLQQAPMPNIGQNSNLQNMQSVPSVSQNPVGSSMGQVMPSNVFTNSQRQMQARQQQVVPLQQQQQ
3) MDSSSWRAPQGQMAQGPPQGGQAGGGGEVSAVPNAPPPATIDSGDWRTQLQADS
4) NVVEQQKQLFQPQRAHPEASSTSLDSTAQTGNASGGDWQEE
5) PVSLQQVQLAQQQMSNMQHSQPQTQIPQMQPQENQMNQQMQPMNVQSSITPMQPNSLTSLQQNTLSSVPPVSNLQQNMMSTLQPASTLDPGQSNTHPLQQVAISSLQQNTASGPQTMNINSLSSQSGMTALQSNLINALQPNSTMIHNQQLKQQEQQMLHTQQLKQQLHPRQLQQQLLQRQQLMQQQQQQQQQQQLQQQPQQQQQQHQQMKPQQQPSQLPGHQMSPLHQVTDSSDLKVRPQISVKTGVFQQHHTNSQRAAYHHQQLKSGSPFPISSPQVLQAASPQVPPHASPQIDQQSMQTSIAKTGTPLQAANSPFVVPSPSTPLAPSPMPSESEKLNSGISSLSNAGNIGPSHATTVSAAA
6) QQMQQNATALLPSQNQQPQQPQQQMVSQIQAQPGGLQHMQQQSNALQRDMQQKIQPTGSLLQ
7) QQQQSQQASMLHQQQTSMAQQPLLPAAQQPQQQQQQLIGQQPGATNIQHNQLIGQQNSMPDMQQQQQRLIGQQNNIQHQQLIGQQNSLSSMHQQQLAPQSSVSGLHQQSMRGTQPGNSAMPTSQHSVVMLQQSKV
1175
112
1
573
706
509
371
1206
267
54
613
1069
570
505










Molecular Recognition Features






MoRF SequenceStartStop




NANANA