<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00932

Description Uncharacterized protein
SequenceMDYKKSKALWIFFLFVSEFLLGITLAAEESQKKNLGTVIGIDLGTTYSCVGVYKNGNVEIIANDQGNRITPSWVAFTDTERLIGEAAKNQAAINAERTIFDVKRLIGRKFDDPEVQRDMKMLPYKIVNKDGKPYIQVKIKDGEVKVFSPEEISAMILQKMKQTAESYLGKEIRSAVITVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAIAYGLDKKSKEMNILVFDLGGGTFDVSILSLDNGVFEVLATSGDTHLGGEDFDYRIMDYFVKLIKKKYNKDISNDKKALGKLRKECERAKRALSSQHQVRVEIESLFGGIDFSEPLTRARFEELNMDLFKKTMGPVKQALKDAGLEKTDIHEIVLVGGSTRIPKVQQLLKDFFDGKEPSKGINPDEAVAYGAAVQGGILGGEGGEETKGILLLDVAPLSLGIETVGGVMTKLIPRNSVIPTKKSQIFTTYQDQQTTVTIKVFEGERSLTKDCRELGRFELSGIPPAPRGVPQIEVTFELDANGILNVRAEDKAAKKAQSITITNDKGRLSQEEIERMVKEAEEFAEEDKKVSERIDARNKLETYIYNMKSTINDKDKLADKIDSDDKTKIESALKDALEWLDDNQNADKDDYDEKMKEVEAVCNPVIKMAYEKSSGSSSESTEDEPYDEL
Length663
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.07
Grand average of hydropathy-0.437
Instability index35.91
Isoelectric point5.16
Molecular weight73700.01
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00932
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      80.56|      24|      27|     568|     594|       1
---------------------------------------------------------------------------
  559-  576 (20.19/ 6.65)	......E..EDKKVSERIDA..RNKLET
  580-  605 (32.62/20.58)	NMKSTIN..DKDKLADKIDSddKTKIES
  606-  630 (27.74/ 9.07)	ALKDALEwlDDNQNADKDDY..DEKMK.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.89|      11|      27|     232|     242|       2
---------------------------------------------------------------------------
  232-  242 (20.54/12.35)	LGGGTFDVSIL
  260-  270 (22.35/14.09)	LGGEDFDYRIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.92|      21|      27|     378|     404|       3
---------------------------------------------------------------------------
  362-  394 (24.62/16.21)	DIHEIVlvggstripkVQ.QLLKDffDGKEPSKG
  396-  422 (26.30/20.94)	NPDEAV.....aygaaVQgGILGG..EGGEETKG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.16|      17|      21|      67|      84|       4
---------------------------------------------------------------------------
   67-   84 (27.93/24.00)	NR..ITPSWVAFtDTERLIG
   89-  107 (25.22/15.97)	NQaaINAERTIF.DVKRLIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00932 with Med37 domain of Kingdom Viridiplantae
Unable to open file!