<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00928

Description Uncharacterized protein
SequenceMAVSWRRSGSFIALAIVFFGCLSAISIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNAERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGEVKVFSPEEISAMVLTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRREAERAKRALSSQHQVRVEIESLFDGIDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKHQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKMKERIDARNGLETYVYNMKNQINDKDKLADKLESDEKEKIEAAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGGASEDDDSHDEL
Length664
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.06
Grand average of hydropathy-0.429
Instability index29.43
Isoelectric point5.16
Molecular weight73277.28
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00928
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.08|      11|      16|     564|     574|       1
---------------------------------------------------------------------------
  564-  574 (18.95/ 9.97)	MKERIDARNGL
  581-  591 (19.14/10.13)	MKNQINDKDKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.32|      17|      21|     593|     609|       2
---------------------------------------------------------------------------
  593-  609 (27.20/18.43)	DKLESDEKEKIEAAVKE
  615-  631 (29.12/20.29)	DDNQSAEKEDYEEKLKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     394.62|     139|     197|     161|     323|       4
---------------------------------------------------------------------------
  161-  323 (185.17/199.13)	KETAEAFLGKKIKDAVVTVPA.............YFNDaqRQATKdaGiiaglnvariINePTaAAIAYG.......LDKKGGE..KNILVFDLGGGTFDVSvlTIDNGVFEVLATNG.....DTHLGGEDFDQRiMEYFIKLIKKKhgKDISKDNRALGKLRREA.ERAKRAlSSQHQVRVEIESlfDGI
  351-  517 (209.44/148.78)	KAMEDAGLEKHQIDEIVLVGGstripkvqqllkdYFDG..KEPNK..G..........VN.PD.EAVAYGaavqggiLSGEGGDetKDILLLDVAPLTLGIE..TVGGVMTKLIPRNTviptkKSQVFTTYQDQQ.TTVSIQVFEGE..RSLTKDCRLLGKFDLTGiPPAPRG.TPQIEVTFEVDA..NGI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00928 with Med37 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GKSEKITITNDKGRLSQEEIERMVREAEEFAEEDKKMKE
528
566










Molecular Recognition Features






MoRF SequenceStartStop




1) KLKEVEAV
628
635