<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00924

Description Uncharacterized protein
SequenceMKVLSPTHPPARTEDLFSGFSPPATFRAGFARRSESMATTQSSEIVEEGGEKVYVAVGKSVAKAGALLQWCFRTFVGSEICILHVHKPSPLIPTLLGKLPASQANPEVVTAFRNEEWEATGKLLQNYKKICSTSKVKASIVTSEADQVQLEIVNLVSRHDIKKLVIGAIPDCSKLKKCSSKASYAAKMAPPFCKIWFVNKGKLVWTRQDSQSSSSFALISQELAAASNLRSQSAPSSKSNDIYHPECIRSRSAQYPACSGTRNCFQKEGAKVEPSSLTLPTRCYPSTFQFFSPASLSSSSGYASSAVSRVSSDSNSKVEKEGLYGWLKELKKEAEESRDEADSELLMSQKLEAEAVEAISNAKAFESAYEREVKLRKAAEEELRTTILEQEKLLEEREVLTRELQKAMRNIAVLDSRAREANCRREDVAGELKLIQSSLASLRQERQKIQQQKIEAKQWLDHWKSGSQVNGENINGLVQFSGESLELAEFSLLDLQAATCNFSESFKIGRGGNGAVYKGEMLNRTVAIKMLHPHSIQKQPEFCQEAQILGRVHHPHLVTLIGVCPEAWSLVFEYLPGGSLQDRLFHGSNVCPLDWKTRVQIISEIASGLLFLHSSGPEGITHGNLKPNNVLLDSENCCKVGDFGIFRLAPVQTLRCPSFRSYTETGGAFPYTDPEFHRTGILTPKSDVFSFGLIILQLLTGKPPAGLACEVRKMVCCGKITAILDSSAGEWSTFVARRLVELGLQCCELNGRDRPSLTPTLVRELEHLHVLEERLVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLENGRETSPMTNLKLSHLTLTPNHALRLAIQEWLCKS
Length846
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.07
Grand average of hydropathy-0.267
Instability index50.87
Isoelectric point7.71
Molecular weight93625.92
Publications
PubMed=25190796

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00924
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     371.35|     117|     131|     587|     716|       1
---------------------------------------------------------------------------
  587-  716 (182.64/134.09)	GSNVCPLD.....WKTRV.QIISEIAsgllfLHSSGPEGITHGNLKPnNVLLDSENCCKVGDfgifRLAPVQTLrCPSFRSYTE....TGGAFPYTDPEFHrtGILTPKSDVFSFGLIILQLLTGKPPAGLACEVRKMVC
  718-  844 (188.71/107.25)	GKITAILDssageWSTFVaRRLVELG.....LQCCELNGRDRPSLTP.TLVRELEHLHVLEE....RLVPSFFL.CPILQEIMHdpqvAADGFTYEGEALR..GWLENGRETSPMTNLKLSHLTLTPNHALRLAIQEWLC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.48|      42|     102|     311|     354|       3
---------------------------------------------------------------------------
  311-  354 (62.18/44.59)	SSDSNSKVEKEGLYGWLKELKKEAEESRDEADSelLMSQKLEAE
  416-  457 (66.30/41.77)	SRAREANCRREDVAGELKLIQSSLASLRQERQK..IQQQKIEAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.96|      14|      24|     370|     384|       4
---------------------------------------------------------------------------
  370-  384 (17.74/13.86)	EREVkLRKAAEEELR
  396-  409 (23.22/13.43)	EREV.LTRELQKAMR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00924 with Med32 domain of Kingdom Viridiplantae
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