<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00923

Description Uncharacterized protein
SequenceMQRYHAASCTSAVNNTAIGGSARDVSRAESSSIPSNFSLNSRRPLPLTPYKLRCDKEPLNSRLGPPDFHLQTPTCPEETLTRDYVQSGYRETVEGIEENRETSLSQIQAFTKPVILKCKESIRKCHRAINESRAQKRKAGQVYGVPLSGSLLSKPGAFPEQKPCGEEFRKKWIEGLSQPHKRLCSLADHVPHGYRRKSLLEVLIRNNVPLLRATWFVKVTYLNQVRPGSSNLSGGVPDKTQFSRSEQWTKDIIDYLQAFLDEFVSKNNFHSTLHIRDRSPQMVYPGTLQHRNDAASTSTDADEPSLHFKWWYVVRLLQWHHAEGLIVPSLIIDWVFNQLQEKERLGILQLLLPVIYGVIEAVVLCQTYVRTLVGIAMRFIQEPSPGGSDLVDNSRRAYTMSALVEMLHYLIIAVPDTFVALDCFPLPLCLVTNVVNDGSFLLKIAEDESNMKTGPLEVACLQRDKGVEVHPDSLTINCIVSSIQKRAENLAKAARPGHPSQNVAKALLALDKSLIHGDVSVAYKLLFENLCDGAVDERWIAEVSLCLRSSLKYIGVVTLSFISSIFFICEWATCDFRDFRTGPPSGQKFTGRKDLSQIYIAIRILQLKRREMQSLSQGKNESSLAPDTLAKDPDLQNNYPGRFPVGNACEQNKYSLKSGKTRNLSNIFESPSPLHDIIVCWIDQHEVHSGEGVKRLQLLIMELVRAGIFYPQAYVRQLIVSGIMDGNGISVDLERRKRHHRILKQLPSSYVHDALEEAQVLEGAMLLEVINTYANERRLVLRGLLDCHKSSGSSWQKQKHYYNSGGGSDPSSVDQWRSLQGISSLTTKNVDQVVELEDLKASIVMLLQLPSSSLSSDSGLENFVGGFKRSTGSSITKIDIGEGTPGCEECRRVKRQKLSEDRSSYPQGFLSNALDDEDIWWLRRGPKSLDKMDPPPKQAKQSGRGRQKGVRKTQSLAQLAAARIEGSQGASTSHVCDNRVNCPHHRTGVEGDAPKSGDGIRMAYGSDIVSIGKVLKKMRLVEKRTVMLWLISVVKHLVEEAEKTAAKVGQYGRPYSAVDDANSVRWKLGEDELSMFLYLMDVSNELVSAARFLLWLLPKALSSPAASIHAGRNILMLPRNTENVVCEVGEAFLVSSIRRYENIIVAADLVPETLKAAMHRVAATMASTGRVSGSSALVYARNLVKKYGNVASVVDWEKNLKSSYDKRLISELESGRLPDAEFGFPLGVPAGVEDLDDFFRHKISGVRVSRVALTMRDIVQRQVDEVFQYFFGKERKLFGPGTVKSPVLENLDDGYQIAQQIVMGLMECMRQTGGAAQEGDPTLVSSAISAIVSNVGLVIAKIPDLTAGNHLNFQSTSSSMHFARRILRIHTTCLCLLKDALGERQSRVFEVALAVEASTALAQVFVPGKAPRTQFHPSPESHDSSSNSYEALNSSVKSVLGRGAKIAGAISALLVGALLQGVTSLERMVTLFRLREGLDPIHFFRSLKSNSNGSARSIGALKLDNLVEVSTHWFRVLVGNCRTVSDGFIVELLGEASVVGLSRMQRTLPLNLVFPPAYSIFAFVIWKGLIFNTGVGLRDDLQQLYQSLALAIGDALKHLPFRDVCLRDTHGLYDLIAADAIDSEFAALLESHSADVLYKSMAFVPLRARLFLNALIDCRMPQSLLKPEDVNRMQGQGGLKNYYQEKDANFRDKLVHVLDTLQPAKFHWQWVELRLLLNEQTVIDKLKNEAPLAEAIKSVSPNADKVAVSEKESSFVELVVMRLLARPDAASLFSEVVHLFGRSLEDQMLMQTKWLLGGTDVLYGRKSIRQRLIINAEKEHLSTKLQFWKPWGWCDSNSDSRKTRGSKRKFEVASLEEGEVVDEGSDVRFPGRGSTQVVDVEGFLVSQQHVTERAFIELVLPCVDQGSDASRNTFANDMIKQMNNIEQQINVLSHGAAKSVGSVASGAESPASKGNSRKGMRGGSPGLSNSRRPAGPADGVPSSPAGLRASMSLRLQFLLRLLPTMCTDGEPGKSMRQMLAAVILRLLGCRVVHEAAGHTTSSTLNLSKRDVESLTEASATSVLLSGESLFDCLLLLLHGLLSSYRPSWLKLKSNSKSASECGKDFSVFGREVAENLQNDLNRMHMPDHIRWRIQTAMPILLPSVRCSISCQPPSISPASIAALQSSNQISVLQPHNSILSQRNPVSLVRTVANMAGKAKQLPLQDLDLEIDPWTLLEDGTGVQSSSNSAAIGGSDHANLRASNWLKGAIRVRRTDLAYIGAIDEDS
Length2266
PositionKinase
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.07
Grand average of hydropathy-0.203
Instability index46.57
Isoelectric point8.77
Molecular weight250473.79
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00923
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     232.65|      62|      62|     747|     808|       1
---------------------------------------------------------------------------
  687-  740 (51.14/33.18)	....VH.SG.EGVKRLQ.LLIMELVRAgifYpqAYVRQLIVSGIMDGNGISVDLERRKRHH..........
  747-  808 (103.78/76.94)	PSSYVH.DALEEAQVLEGAMLLEVINT...Y..ANERRLVLRGLLDCHKSSGSSWQKQKHY...YNSGGGS
  810-  873 (77.73/55.28)	PSSVDQwRSLQGISSLTTKNVDQVVEL...E..DLKASIVM..LLQLPSSSLSSDSGLENFvggFKRSTGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.07|      43|      64|     993|    1037|       2
---------------------------------------------------------------------------
  993- 1037 (69.05/51.20)	APKSG................DGIRMAYGSDIVSIGKVLKKM..RLVEKRTVMLWLISvvKHL
 1041- 1101 (58.02/36.68)	AEKTAakvgqygrpysavddaNSVRWKLGEDELSMFLYLMDVsnELVSAARFLLWLLP..KAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.82|      54|      64|    1599|    1662|       3
---------------------------------------------------------------------------
 1599- 1657 (78.51/75.35)	LPFRDVC.LRDTHGLYDLIAADaiDSEFAALLeSHSADVLYKS...MAFVPLraRLFLN..ALID
 1665- 1724 (79.31/46.97)	LKPEDVNrMQGQGGLKNYYQEK..DANFRDKL.VHVLDTLQPAkfhWQWVEL..RLLLNeqTVID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.21|      40|      67|    1798|    1843|       4
---------------------------------------------------------------------------
 1798- 1843 (62.94/56.73)	GTDVLY.GRKSIRqrlIINAE.....KEHLSTK..LQFWKPwgwC.DSNSD.SRKT
 1864- 1913 (48.26/27.40)	GSDVRFpGRGSTQ...VVDVEgflvsQQHVTERafIELVLP...CvDQGSDaSRNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.39|      45|     517|      54|     104|       5
---------------------------------------------------------------------------
   54-  104 (66.98/47.32)	CDKEPLnsRLGPPDFHLQTptcPEETLTRDYV.....QSGYREtVEGIEENR.ETSL
  574-  624 (70.40/33.76)	CDFRDF..RTGPPSGQKFT...GRKDLSQIYIairilQLKRRE.MQSLSQGKnESSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.76|      32|    1928|       8|      53|       6
---------------------------------------------------------------------------
    8-   44 (44.83/29.69)	SCTSAVNNTAIGGSARDVSRAESssiPsNFSlNSRRP
 1942- 1973 (56.93/23.42)	SVASGAESPASKGNSRKGMRGGS...P.GLS.NSRRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.59|      27|      62|    1426|    1456|       7
---------------------------------------------------------------------------
 1426- 1456 (37.82/31.68)	SNSyealNSSVKSV....LGRGAKIAGAISALLVG
 1489- 1519 (41.77/24.75)	SNS....NGSARSIgalkLDNLVEVSTHWFRVLVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.56|      10|     870|     138|     148|       9
---------------------------------------------------------------------------
  138-  148 (15.95/14.09)	KAGQvYGVPLS
 1047- 1056 (21.61/13.82)	KVGQ.YGRPYS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00923 with Med12 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) RGPKSLDKMDPPPKQAKQSGRGRQKGVRKTQSLAQ
2) VGSVASGAESPASKGNSRKGMRGGSPGLSNSRRPAGPADGVPSS
924
1940
958
1983










Molecular Recognition Features






MoRF SequenceStartStop




1) ALDDEDIWWLRRGPKS
913
928