<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00923

Description Uncharacterized protein
SequenceMQRYHAASCTSAVNNTAIGGSARDVSRAESSSIPSNFSLNSRRPLPLTPYKLRCDKEPLNSRLGPPDFHLQTPTCPEETLTRDYVQSGYRETVEGIEENRETSLSQIQAFTKPVILKCKESIRKCHRAINESRAQKRKAGQVYGVPLSGSLLSKPGAFPEQKPCGEEFRKKWIEGLSQPHKRLCSLADHVPHGYRRKSLLEVLIRNNVPLLRATWFVKVTYLNQVRPGSSNLSGGVPDKTQFSRSEQWTKDIIDYLQAFLDEFVSKNNFHSTLHIRDRSPQMVYPGTLQHRNDAASTSTDADEPSLHFKWWYVVRLLQWHHAEGLIVPSLIIDWVFNQLQEKERLGILQLLLPVIYGVIEAVVLCQTYVRTLVGIAMRFIQEPSPGGSDLVDNSRRAYTMSALVEMLHYLIIAVPDTFVALDCFPLPLCLVTNVVNDGSFLLKIAEDESNMKTGPLEVACLQRDKGVEVHPDSLTINCIVSSIQKRAENLAKAARPGHPSQNVAKALLALDKSLIHGDVSVAYKLLFENLCDGAVDERWIAEVSLCLRSSLKYIGVVTLSFISSIFFICEWATCDFRDFRTGPPSGQKFTGRKDLSQIYIAIRILQLKRREMQSLSQGKNESSLAPDTLAKDPDLQNNYPGRFPVGNACEQNKYSLKSGKTRNLSNIFESPSPLHDIIVCWIDQHEVHSGEGVKRLQLLIMELVRAGIFYPQAYVRQLIVSGIMDGNGISVDLERRKRHHRILKQLPSSYVHDALEEAQVLEGAMLLEVINTYANERRLVLRGLLDCHKSSGSSWQKQKHYYNSGGGSDPSSVDQWRSLQGISSLTTKNVDQVVELEDLKASIVMLLQLPSSSLSSDSGLENFVGGFKRSTGSSITKIDIGEGTPGCEECRRVKRQKLSEDRSSYPQGFLSNALDDEDIWWLRRGPKSLDKMDPPPKQAKQSGRGRQKGVRKTQSLAQLAAARIEGSQGASTSHVCDNRVNCPHHRTGVEGDAPKSGDGIRMAYGSDIVSIGKVLKKMRLVEKRTVMLWLISVVKHLVEEAEKTAAKVGQYGRPYSAVDDANSVRWKLGEDELSMFLYLMDVSNELVSAARFLLWLLPKALSSPAASIHAGRNILMLPRNTENVVCEVGEAFLVSSIRRYENIIVAADLVPETLKAAMHRVAATMASTGRVSGSSALVYARNLVKKYGNVASVVDWEKNLKSSYDKRLISELESGRLPDAEFGFPLGVPAGVEDLDDFFRHKISGVRVSRVALTMRDIVQRQVDEVFQYFFGKERKLFGPGTVKSPVLENLDDGYQIAQQIVMGLMECMRQTGGAAQEGDPTLVSSAISAIVSNVGLVIAKIPDLTAGNHLNFQSTSSSMHFARRILRIHTTCLCLLKDALGERQSRVFEVALAVEASTALAQVFVPGKAPRTQFHPSPESHDSSSNSYEALNSSVKSVLGRGAKIAGAISALLVGALLQGVTSLERMVTLFRLREGLDPIHFFRSLKSNSNGSARSIGALKLDNLVEVSTHWFRVLVGNCRTVSDGFIVELLGEASVVGLSRMQRTLPLNLVFPPAYSIFAFVIWKGLIFNTGVGLRDDLQQLYQSLALAIGDALKHLPFRDVCLRDTHGLYDLIAADAIDSEFAALLESHSADVLYKSMAFVPLRARLFLNALIDCRMPQSLLKPEDVNRMQGQGGLKNYYQEKDANFRDKLVHVLDTLQPAKFHWQWVELRLLLNEQTVIDKLKNEAPLAEAIKSVSPNADKVAVSEKESSFVELVVMRLLARPDAASLFSEVVHLFGRSLEDQMLMQTKWLLGGTDVLYGRKSIRQRLIINAEKEHLSTKLQFWKPWGWCDSNSDSRKTRGSKRKFEVASLEEGEVVDEGSDVRFPGRGSTQVVDVEGFLVSQQHVTERAFIELVLPCVDQGSDASRNTFANDMIKQMNNIEQQINVLSHGAAKSVGSVASGAESPASKGNSRKGMRGGSPGLSNSRRPAGPADGVPSSPAGLRASMSLRLQFLLRLLPTMCTDGEPGKSMRQMLAAVILRLLGCRVVHEAAGHTTSSTLNLSKRDVESLTEASATSVLLSGESLFDCLLLLLHGLLSSYRPSWLKLKSNSKSASECGKDFSVFGREVAENLQNDLNRMHMPDHIRWRIQTAMPILLPSVRCSISCQPPSISPASIAALQSSNQISVLQPHNSILSQRNPVSLVRTVANMAGKAKQLPLQDLDLEIDPWTLLEDGTGVQSSSNSAAIGGSDHANLRASNWLKGAIRVRRTDLAYIGAIDEDS
Length2266
PositionKinase
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.07
Grand average of hydropathy-0.203
Instability index46.57
Isoelectric point8.77
Molecular weight250473.79
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of development, heterochronic	GO:0040034	IEA:EnsemblPlants
regulation of radial pattern formation	GO:0090213	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00923
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     232.65|      62|      62|     747|     808|       1
---------------------------------------------------------------------------
  687-  740 (51.14/33.18)	....VH.SG.EGVKRLQ.LLIMELVRAgifYpqAYVRQLIVSGIMDGNGISVDLERRKRHH..........
  747-  808 (103.78/76.94)	PSSYVH.DALEEAQVLEGAMLLEVINT...Y..ANERRLVLRGLLDCHKSSGSSWQKQKHY...YNSGGGS
  810-  873 (77.73/55.28)	PSSVDQwRSLQGISSLTTKNVDQVVEL...E..DLKASIVM..LLQLPSSSLSSDSGLENFvggFKRSTGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.07|      43|      64|     993|    1037|       2
---------------------------------------------------------------------------
  993- 1037 (69.05/51.20)	APKSG................DGIRMAYGSDIVSIGKVLKKM..RLVEKRTVMLWLISvvKHL
 1041- 1101 (58.02/36.68)	AEKTAakvgqygrpysavddaNSVRWKLGEDELSMFLYLMDVsnELVSAARFLLWLLP..KAL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     157.82|      54|      64|    1599|    1662|       3
---------------------------------------------------------------------------
 1599- 1657 (78.51/75.35)	LPFRDVC.LRDTHGLYDLIAADaiDSEFAALLeSHSADVLYKS...MAFVPLraRLFLN..ALID
 1665- 1724 (79.31/46.97)	LKPEDVNrMQGQGGLKNYYQEK..DANFRDKL.VHVLDTLQPAkfhWQWVEL..RLLLNeqTVID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.21|      40|      67|    1798|    1843|       4
---------------------------------------------------------------------------
 1798- 1843 (62.94/56.73)	GTDVLY.GRKSIRqrlIINAE.....KEHLSTK..LQFWKPwgwC.DSNSD.SRKT
 1864- 1913 (48.26/27.40)	GSDVRFpGRGSTQ...VVDVEgflvsQQHVTERafIELVLP...CvDQGSDaSRNT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.39|      45|     517|      54|     104|       5
---------------------------------------------------------------------------
   54-  104 (66.98/47.32)	CDKEPLnsRLGPPDFHLQTptcPEETLTRDYV.....QSGYREtVEGIEENR.ETSL
  574-  624 (70.40/33.76)	CDFRDF..RTGPPSGQKFT...GRKDLSQIYIairilQLKRRE.MQSLSQGKnESSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.76|      32|    1928|       8|      53|       6
---------------------------------------------------------------------------
    8-   44 (44.83/29.69)	SCTSAVNNTAIGGSARDVSRAESssiPsNFSlNSRRP
 1942- 1973 (56.93/23.42)	SVASGAESPASKGNSRKGMRGGS...P.GLS.NSRRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.59|      27|      62|    1426|    1456|       7
---------------------------------------------------------------------------
 1426- 1456 (37.82/31.68)	SNSyealNSSVKSV....LGRGAKIAGAISALLVG
 1489- 1519 (41.77/24.75)	SNS....NGSARSIgalkLDNLVEVSTHWFRVLVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.56|      10|     870|     138|     148|       9
---------------------------------------------------------------------------
  138-  148 (15.95/14.09)	KAGQvYGVPLS
 1047- 1056 (21.61/13.82)	KVGQ.YGRPYS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00923 with Med12 domain of Kingdom Viridiplantae
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