<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00922

Description Uncharacterized protein
SequenceMVGSGNELDAPLHSDEDYCSLSPSPLVTEGNMHDELYNRLQQSVEDAEISRREAYEESMKHRKAVKEAIEAARWARASEARYSEEFRLRKEVEEALVKHKEEIENMQYQLDEIKNKLQVAMEQKSSLESQIATSDKTVEDLKQKMFAAIDLLQKFKIEKDNLQVERDNAVREAEELKIKQAEEASSASMSCFFSEYSICEINEATHNFDQELKIGEGGYGSVYKGHLHHTQVAIKVLHQHSSQGPLEFQQEVGILSTLRHPNIVTLIGACRETCSLIYEYLPNGSLEDRLSCKDNTPPLSWQTRIRIASELCSALIFLHSCSPRGIIHGDLKPANILLDNNFVSKLCDFGMCRVLGEDKFSDNNTSLCCRTDHPKGTLAYIDPEYLATGELTTKSDVYSFGIILLRLLTGKPALGIYKEVENALNKGNLKDILDSTAGDWPFVQAQQLVHLAMRSCEMSRKTRPELASEIWRVLEPMRASCGACCSRLIFEEESQMPSYFICPIFQEVMQDPVVAADGYTYEAEALKGWLDSDHDTSPMTNLKLAHRNLVQNHALRSAIQEWLQKR
Length566
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.07
Grand average of hydropathy-0.450
Instability index49.62
Isoelectric point5.25
Molecular weight64108.90
Publications
PubMed=25190796

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00922
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.05|      25|      25|      44|      68|       1
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   44-   68 (42.57/26.37)	VEDAEISR.REA.YEESMKHRKAVKEA
   69-   95 (34.48/20.14)	IEAARWARaSEArYSEEFRLRKEVEEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     211.92|      69|     211|     200|     279|       4
---------------------------------------------------------------------------
  200-  279 (102.63/90.81)	EINEATH..NFDQELKIGEGGYGSVYKGHLHHtqVAIKVLHQHSSQGPlEFQQEV.GILSTLRhpnivTLIGACretCS.LIYE
  419-  491 (109.29/67.55)	EVENALNkgNLKDILDSTAGDWPFVQAQQLVH..LAMRSCEMSRKTRP.ELASEIwRVLEPMR.....ASCGAC...CSrLIFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.15|      13|      25|       1|      13|       5
---------------------------------------------------------------------------
    1-   13 (24.36/16.95)	MVGSGN...ELDAPLH
   26-   41 (17.78/10.46)	LVTEGNmhdELYNRLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00922 with Med32 domain of Kingdom Viridiplantae
Unable to open file!