<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00920

Description Uncharacterized protein
SequenceMAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTVFDAKRLIGRRLSDSSVQNDIKLWPFKVIAGPGDKPMIAVNYKGEEKQFAAEEISSMVLIKMKEVAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSAGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGSPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDAVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSGIPPAPRGVPQITVCFDMDANGILNISAEDKTTGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEEHQKKVDTKNALENYAYNMRNTIRDEKISAKLEPTDKKKIEDAVEEAIKWLDSNQLAEADEFEDKMKELESLCNPIIAKMYQGGADGGMGGAMDEDGPSVGGGSGAGPKIEEVD
Length650
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.06
Grand average of hydropathy-0.437
Instability index34.53
Isoelectric point5.08
Molecular weight71170.74
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00920
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.50|      18|      41|     337|     356|       1
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  337-  356 (26.17/21.14)	VHDAVLVGGSTRipKVQQLL
  381-  398 (30.33/17.30)	VQAAILSGEGNE..KVQDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     280.78|      84|     397|     102|     190|       2
---------------------------------------------------------------------------
  102-  190 (127.62/104.66)	GDKPMIAV.NYKGeekQFAAEEISSMV..LIKMK.EVAEAYLGTTIKNAVVTVPAYfnDSQRQATKDAGVIAGLNVM..RIINEPTAA.AIAYGLD
  444-  485 (39.38/21.43)	..................................................VLIQVY..EGERTRTKDNNLLGKFELS..GIPPAPRGVpQITVCFD
  502-  588 (113.77/79.39)	GQKNKITItNDKG...RLSKEEIERMVqeAEKYKsEDEEHQKKVDTKNALENY.AY...NMRNTIRDEKISAKLEPTdkKKIEDAVEE.AIKW.LD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.19|      18|      21|      38|      55|       3
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   16-   33 (19.09/10.79)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.57/23.47)	NR..TTPSYVAFTDSER..LIG
   60-   78 (24.54/15.91)	NQvaMNPTNTVF.DAKR..LIG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00920 with Med37 domain of Kingdom Viridiplantae
Unable to open file!