<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00916

Description Uncharacterized protein
SequenceMEENITRADDQKPLLPPTSALVAVAINGGKKSKYVVRWALDKFVPEGEVSFKLLHVRPKIIAVPTPMGNLIPIHQVRDDVVAAFRKEMEWQVTEKLLPYKKMCTREKVQVDIVLVESEDVVNAIAGEVAKCSINKLVIGASSRRLFSRGQNLSSKISECSPSFCTVYAVSKGKLSSVRPSDSETHRSIKDDCSDSSRLTSNSSSPSSSSQAEWTDQSSTASYCLLSPASLPLQRFQALSTINQALCHRRMNTNDIIYQNSLSLKTGDRDADATSCLSSSDTNDVYSAASSFRSLIQDAMWVNDQASVADTVTDFSSGNQININFELEKLRIELRHLQGMHAMAQNEAIDASRKLNDLNKRRLEDTIKLKEIILQEEEAKALAKKEKERYEAAKREADYMKECAEREAAHKKEAEAKALREAKEKEKLENALVGHVHQYQKFTWEEIVSATLSFSEDLRVGMGAYGTVYKGSLHHTTAAVKILHSKDTYRTKQFQQELEILSQIRHPHLLILLGACPDHGCLVYEFMKNGSLEERLLRKNSSPPLPWFERFRIAWEVASALVFLHSSKPKAIIHRDLKPANILLDHNFVSKIGDVGLSTMLHYDCSSVSTAYKDTAPVGTFCYIDPEYQRTGLISPSSDVYGFGIVILQLLTAKPPMGIAHLMEKAIENDSLMDVLDQDAGEWPGKETRELAMLALRCTELRGKDRPDLKDKILPALEKLKETADKGRDWPPIAKLLPPNMFVCPILKDVMENPCVAADGYTYDRKAIEEWLEENGNSPMTNLPLPHKNLLPNYTLLSAIMEWKSGRH
Length807
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.06
Grand average of hydropathy-0.388
Instability index43.41
Isoelectric point6.55
Molecular weight90462.39
Publications
PubMed=25190796

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00916
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.51|      24|      25|     179|     203|       1
---------------------------------------------------------------------------
  179-  203 (38.49/24.76)	PSDSeTHRSIKDDCSDSSR.LTSNSS
  205-  229 (38.01/20.18)	PSSS.SQAEWTDQSSTASYcLLSPAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.80|      24|      26|     246|     270|       2
---------------------------------------------------------------------------
  246-  270 (39.80/30.73)	CHRRMNTNDiIYQNSLSLKTGDRDA
  275-  298 (41.00/26.77)	CLSSSDTND.VYSAASSFRSLIQDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.09|      19|      35|     374|     392|       4
---------------------------------------------------------------------------
  349-  365 (19.75/10.47)	..DASRKLND.LNKRRLEDT
  374-  392 (30.69/20.41)	QEEEAKALAK.KEKERYEAA
  411-  430 (25.64/15.82)	KEAEAKALREaKEKEKLENA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.76|      46|     336|      99|     148|       5
---------------------------------------------------------------------------
   99-  148 (63.45/75.87)	YKKMcTREKVqVDIVLVESEDV.VNAIA.GEVAKCSINKlvIGASSRRLFSR
  438-  485 (72.31/63.16)	YQKF.TWEEI.VSATLSFSEDLrVGMGAyGTVYKGSLHH..TTAAVKILHSK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.05|      27|     151|     574|     604|       9
---------------------------------------------------------------------------
  574-  604 (44.35/47.27)	RDLKPANILLDHN.FVSKIgdvgLSTMLHYDC
  727-  754 (50.70/40.31)	RDWPPIAKLLPPNmFVCPI....LKDVMENPC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.32|      22|     234|     523|     545|      11
---------------------------------------------------------------------------
  523-  545 (36.13/29.95)	YEFMKNgSLEERLLRKNSSP....PLP
  760-  785 (37.19/25.04)	YTYDRK.AIEEWLEENGNSPmtnlPLP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00916 with Med32 domain of Kingdom Viridiplantae
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