<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00915
Description |
Mediator of RNA polymerase II transcription subunit 9 |
Sequence | MDHYGGNWSMIPNVQTLSSSSNPSTPSSTQDHHHLFLQQQPPLYQQQQQQQQHCFSQQQQQHQSLASHFHLLHLVENLADAIENGTRDQHSDALVTELNSQFDKCQQLLNSISGSINSRSMTVEGQKHKLEETEQLLNQRRDLISKYRNSVEELINSEL |
Length | 159 |
Position | Middle |
Organism | Coffea canephora (Robusta coffee) |
Kingdom | Viridiplantae |
Lineage | Eukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta>
Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae>
asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex>
Bertiereae - Coffeeae clade> Coffeeae> Coffea.
|
Aromaticity | 0.05 |
Grand average of hydropathy | -0.940 |
Instability index | 61.41 |
Isoelectric point | 5.68 |
Molecular weight | 18283.79 |
Publications | PubMed=25190796
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364145
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP00915
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 79.33| 25| 27| 85| 110| 1
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85- 110 (38.27/25.47) GTRDQHSdALVTELNSQFDKCQQLLN
114- 138 (41.06/22.95) GSINSRS.MTVEGQKHKLEETEQLLN
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 61.76| 17| 34| 20| 36| 2
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20- 36 (31.63/13.96) SSNPSTPSSTQDHHHLF
56- 72 (30.13/12.99) SQQQQQHQSLASHFHLL
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