<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00913

Description Uncharacterized protein
SequenceMVARGGRGGGGGFRGGRGGDGGRGGGRGGGRGGFGGRGGSAMKRGGGRGGGGRGGGRGAGRGRGGGMKGGSRVVVEPHRHAGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKVEYRIWNPFRSKLAAAILGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPEGMVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFMISIKANCIDSTAPAEAVFAQEVKKLKADQFKPIEQVTLEPFERDHACVVGAYRVPTKQKAAAA
Length312
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.06
Grand average of hydropathy-0.300
Instability index30.61
Isoelectric point10.21
Molecular weight32567.83
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00913
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.62|      16|      18|      23|      39|       2
---------------------------------------------------------------------------
   23-   39 (33.50/11.10)	RGGGRGGGRGGfGGRGG
   40-   55 (35.00/ 8.83)	SAMKRGGGRGG.GGRGG
   57-   70 (31.11/ 7.15)	RGAGR..GRGG.GMKGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.27|      14|      17|     201|     214|       3
---------------------------------------------------------------------------
  201-  214 (25.29/21.15)	IIEDARHPAKYRML
  221-  234 (23.99/19.67)	IFSDVAQPDQARIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.45|      38|     159|     100|     138|       4
---------------------------------------------------------------------------
  100-  138 (60.37/57.25)	PGEAVYNEKRISVQNEDGSKVEYRIWNPFRsKLAAAILG
  262-  299 (64.08/54.98)	PAEAVFAQEVKKLKADQFKPIEQVTLEPFE.RDHACVVG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.23|      11|      23|     140|     151|       5
---------------------------------------------------------------------------
  140-  151 (14.68/13.45)	VDDIwIKPGARV
  165-  175 (19.55/10.51)	VSDV.VGPEGMV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00913 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MVARGGRGGGGGFRGGRGGDGGRGGGRGGGRGGFGGRGGSAMKRGGGRGGGGRGGGRGAGRGRGGGMKGGSRV
1
73










Molecular Recognition Features






MoRF SequenceStartStop




1) MVARGGRGGGGGFRGGRGGDGGRGGGRGGGRGGFGGRGGSAMKRGGGRGGGGRGGGRGAGRGRG
1
64