<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00907

Description Uncharacterized protein
SequenceMASEGVGFVENQGHGGSPWEGLMELTKSAQDRNMDPLMWAMQLSSTLTSAGLSVPSPDLANFLVSHICWANNVPAAWKFLEKALTLRIVPPMLVLALLSTRVIPNRNRYPAAYRLYMELLKRYAFYLPSLIHGPNYPKIMESIDNVLHLTQMFGLQACEPGLLVVEFVFSIVWELLDASLDDEGLLEIAPEKKSRWATRNQDMEIDNHDGIQLKTTENQEAMLKMNTVLAIELIGEFFRNKVSSRILYLAGRNMPGHWESFIQHLHLLTGKSTALRNSKNISPEALLELTSSTRRVLSRECKTSSQQMFHAVMVSGSLISSAGQCHGTSLSALWLPIDMFLEDTMDGSQVTATSAVETLTGLVKAIQAVNRTTWQDTFLGLWIAALRLVQRERDSSEAPVPRIDTCLCLLLSITPLAIVNIIEEEESSGGSESCHLTGPRKEKHSVGKRRKDLVASLQQLEDYEGLLTPPLSVSSLANQAAAKAMMFLSGLSVGSGYFDGISLNDMPMGCSGNLLHLIVEACIAREILDTSSYLWPGYVKGRTNQMPRSISGHMPGWSSLVKGSPLTPPLVSALVSIPASSLAEIEKVYEIAANGSNDEKISAATVFCGASLVRGWNIQEHTVLFITRLLSPPIPADYSGPASHLISYALFLNVLLVGISPVDTIQIFSLHGLVPQLAGALMPICEVFGSCAPNVSWTLTTGEEISTHTVFSNAFTLLLKLWRFDQPPLEHVFGDVPPVGSHLTPEYLLLVRNLQLTSSENSPIGQSKSKRLSRLSSPSDREPIVMDSFPKVKQWYRQNQACIASTLSGLVPGTVHQIVDSLLAMMFRRINRVAQPMTPTASGSNSSSGTGIDDFSLRLKIPAWDILEAIPFMLDAALTACGHGTLSPRELATGLKDLADFFPASLATIASYFSAEVTRGVWKHACMNGSDWPSPAANLANVEQQIKKILAATGVDIPSLPVGGNSPATLPLPLAAYVSLTITYKLERSTDRFLNLVGPSLRNLAIGCPWPSMPIIVALWAQKVKRWNDFLVFSASQTVFHHNSDAVVQLLRACFTTTLGLNSSSISSNGGVGGLLGHGFGSHFYGGMHPVAPGILYLRVHRAVRNVMFMTEEIVSLLMQSVKDIVSSGLPAEKQEKLKKSKFSMKYGQVSLAAAMTRVKVAASLGASIVWITGGLSLVQSLIKETLPSWFISAQGSEANGGEPGGMVAMLGGYALAYFAVLSGTFGWGVDSSLGASKRRAKILGAHLEFLASAVDGKISLGCNKATWRAYVSGFVSLMVGCTPKWMNEVDVDVLKRLSWALKQWNEEELALALLGVSGVGAMGAAAELIIETGY
Length1335
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.07
Grand average of hydropathy0.144
Instability index45.04
Isoelectric point6.60
Molecular weight144696.55
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
phenylpropanoid metabolic process	GO:0009698	IEA:EnsemblPlants
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00907
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     214.85|      50|     160|     466|     515|       1
---------------------------------------------------------------------------
  466-  515 (84.41/60.73)	LLTPPLS..VSSLANQAAAKAMMFLSGLSVGSGYFDGI...SLNDMPMGCSGNLL
  565-  609 (60.65/41.04)	PLTPPL...VSALVSIPASSLAEIEKVYEIAANGSNDE...KISAATVFCG....
  629-  682 (69.79/48.62)	LLSPPIPadYSGPASHLISYA.LFLNVLLVGISPVDTIqifSLHGLVPQLAGALM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     303.13|      94|     249|     744|     843|       3
---------------------------------------------------------------------------
  744-  843 (151.14/111.82)	TPEYLLLV....RNLQLTSSENS.PI....GQSKSKRLSRLSSPSDREPIVMDSFPKVKQWYRqnqACIASTLsGLVPGTVHQI..VDSLLAMMFRriNRVAQPMTPTASG
  990- 1094 (152.00/95.34)	TDRFLNLVgpslRNLAIGCPWPSmPIivalWAQKVKRWNDFLVFSASQTVFHHNSDAVVQLLR...ACFTTTL.GLNSSSISSNggVGGLLGHGFG..SHFYGGMHPVAPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.73|      26|     167|      20|      46|       4
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   20-   46 (44.72/37.66)	EGLMELT...KS.....AQDRNMDPlMWAMQLSST
  183-  216 (35.01/23.53)	EGLLEIApekKSrwatrNQDMEIDN.HDGIQLKTT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.21|      25|     786|      73|     101|       7
---------------------------------------------------------------------------
   47-   79 (28.53/22.17)	LTsagLSVPSPDLANFLVShicwANnVPAAWKF
   84-  109 (38.67/20.68)	LT...LRIVPPMLVLALLS....TRvIPNRNRY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00907 with Med33 domain of Kingdom Viridiplantae
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