<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00900

Description Uncharacterized protein
SequenceMECFYGLIVAAMFGIFIVLWEAEWYCAFHRADASTVWKEFTTPEGRKYYYNKETKESKWTMPEELKLAREQAEKAASFGSHLEMGVPTAPTSTSVGQPPLVTSVSSTSSTVSAIASSPIAVTPVAAVVNSPTVAVFGSPAVPTVQPAVTSMVSVPSLGETSASPAPTTGSLGMHNVENNSSHIAEGSTGEASSQDIEEAKKGMAVAGKVNVTTSEEKPMDDEPLVFTNKQEAKNAFKALLESANVEADWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLMQRKKIEAEERRLRQRKAKEEFTKMLEECRELTSLTRWSKAVTMLEDDERFKAVEKESDREDLFRSYLVDLQKKERVKAQEEHRRNRSEYRQFLETCGFIKVDSQWRKVQDLLEDDERCSRLDKIDRLEIFQEYIRDLEREEEEQKKKEKEQLRRAERKNRDAFRKLMEEHIAAGILNAKTLWRDYCQKVKDTEAYQAVALNTSGSTPMDLFEDVLEELENQYHDDKTRIKDAVKLEKISVLPMWTLEDFKAAIKESISSEVSDINLQLVFEDLLERAKEKEEKEAKKRQRLAKDFSDLLSTIKEITATSNWEESKELLEDSSEYRSIGEENSCKEIFEEYIARLQEKAKEKERKREEEKARKEREREEKEKKKDKDRREKEKEKEKDKEKEREREREREKEKGKERSKKDEVDTANADAIDDHGLKEEKKKEKDDHGLKEEKKREKDRDKKHRKRHHSVTDDASSEKDEKEETKKSRRHSSDRKKSRKHGHSPESDCETRHKRHRKDHRDGSRRGGGHEELEDGELGEDVEME
Length815
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.06
Grand average of hydropathy-1.167
Instability index49.10
Isoelectric point5.79
Molecular weight94700.74
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00900
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     128.05|      32|      32|     628|     659|       1
---------------------------------------------------------------------------
  628-  655 (41.52/13.77)	.....EKAKEKERKREEEKARKEREREEKEKKK
  656-  682 (26.44/ 6.06)	DKDRrEKEKEKEKDKEKERER.ERER.EK....
  714-  737 (31.60/ 8.70)	EKDD.HGLKE.EKKR.......EKDRDKKHRKR
  776-  804 (28.49/ 7.11)	ESDC.ETRHKRHRKDHRDGSRRGGGHEELE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     453.82|      66|      66|     297|     362|       2
---------------------------------------------------------------------------
  230-  285 (67.78/40.04)	............QEAKNAFKAL.....LES...ANVEADWT.WEQAMRVIINDKRYGAL...KTL...GERKQA.....FNEYL..MQRK.
  286-  356 (97.85/61.51)	KIEAEE.rrlrqRKAKEEFTKM.....LEE...CRELTSLTRWSKAVTMLEDDERFKAV...EKE...SDREDL.....FRSYLVDLQKKE
  357-  423 (93.92/58.70)	RVKAQE....ehRRNRSEYRQF.....LET...CGFIKVDSQWRKVQDLLEDDERCSRL...DK....IDRLEI.....FQEYIRDLEREE
  427-  502 (70.65/42.09)	KKKEKEqlrraeRKNRDAFRKL.....MEEhiaAGILNAKTLWRDYCQKVKDTEAYQAValnTSG...STPMDL.....FEDVLEELEN..
  503-  563 (47.12/25.29)	..QYHD......DK.....TRIkdavkLE......KISVLPMWT.....LED...FKAA...IKEsisSEVSDInlqlvFEDLLERAKEKE
  564-  627 (76.49/46.26)	EKEAKK....rqRLAK.DFSDL.....LST...IKEITATSNWEESKELLEDSSEYRSI...GEE...NSCKEI.....FEEYIARLQ...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     112.06|      19|      19|      86|     104|       3
---------------------------------------------------------------------------
   86-  100 (21.51/10.89)	......VPTAPTSTSVGQPPL
  101-  119 (24.72/13.40)	VTSV..SSTSSTVSAIASSPI
  121-  141 (24.40/13.15)	VTPVaaVVNSPTVAVFGSPAV
  142-  157 (24.48/13.21)	PT....VQPAVTSM.VSVPSL
  158-  172 (16.95/ 7.32)	GETS..ASPAPTTGSLG....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.13|      14|      18|      41|      56|       4
---------------------------------------------------------------------------
   41-   56 (20.30/19.16)	TTPEGRKyyYNKETKE
   60-   73 (23.82/13.49)	TMPEELK..LAREQAE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00900 with Med35 domain of Kingdom Viridiplantae
Unable to open file!