<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00899

Description Uncharacterized protein
SequenceMFRTLGGGNVSNQTPTTSDSGMMMDQNTAHHQQLQQQQQMQNGQRNNPSSSSTSATSRALQFHPARPAILDLFNLYLGRTAQQKSDESAREPPNKTQKRISALNRDLPPRNEQFLLDFEQLLSQFQDQDQLRALTESTLISLVIQCRSHAPRAEFLLFALHSLSSISYINWDTFLPSLLSSVSSVEVSISQGSQSGATVSSATLTQSGVLPPSSTVTNPTNFQSSSPASPLPSVHCIGSPAQSVAEQSPMKSPDVGGGQQSNSRINLITRDNSMSNLRHLCCKIILIGLKFNLKPSTHADVFSHLLNWIINWDQKQQGIDEFDSARYWKPDKALIEWLHSCLDVIWLLVEDDKCRIPFYELVRSNLQVIENIPDDEALFTLILEIHKRRDMMAMHMQMLDQHLHCPTFGTPRLFPQAMNNISGEAATHMRYPAITYPSVLGEPLHGEDIAVSIQRGTLDWERALRCIRHALRNTPSLDWWKRVLLLAPCYRLQAQAPTPGAVFTAEMISEATIDRIAELLKLTNSGNILILDINCWQEWLTFSDVFFFLAKNGCLDFVDFVDKLVSRLQDGDQHILRTNHVTWLLTQIIRVELVMNALNSDSRKVEITRKILSFHKEASSDPNNPQSILLDFVSSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQTTKGERTLDYMNMDDRSIGMFWVVSYTMAQPACESVMNYLASAGVTELLPGSNLQANERIAVMREVSPLPISLLSGFSINLCLKLTFQMEESMFNGQVIPNIAMVETYCRLLLIVPHSLFRPHLTHLTQRNTATLTKPGASILLFEIMNYRLLSLYRYQGKSKNLMYDITKMISSLKGKRGDHRIFRLGENLCMNLLLSLKEFFLVKREGKGPTDFTETLNRIAITSLAIIIKTRGITDFDHLLYLPTMLEQILATSQHAWSEKTLRYFPSVLRDALAGRMDKRGLAIQAWQQAETTVINQCTQLLSPSADPSYVVTYISHSFPQHRQYLCAGAWVLMLGHPESINSANLGRVLREFSPEEVTANIYTMVDVLLQHIHLELQRGHSPQDLMLKACANLSFFIWTHELLPLDILLLALIDRDDDPHSLRIVMSLLESKELQQRVKLYSMNRGQPEHWLLSGTFKRVELQKALGNHLSWKERFPTFFDDIAARLLPVIPLIIYRLIENDAIDAADRVLQLYNLFLHYYPLNFTFVRDILAYFYGHLPGKLILRILSVLDVKKIPFSESFPQHINSANASICPPLDYFATLLLGLANHAIPPLSNSSKLGPAGDVSISSARMQHNKTQAAAQPGQINASEGQKAFYQIQDPGTYTQLILETAVIEILSLPISASQVVSSLVQIVVHIQPTLVQSSNGVHGAPGVGGQSSVLPTSPSGGSNDSFGPTRTSSSPSGMNTSNFIWRSGYTCQQLSCLLIQACGLLLAQLPPEFHVQLYMEAARVVKECWWLTDGKRSASELESAVSYALLDPTWAAQDNTSTAIGNVVALLHSFFSNLPQEWLEGTHLIIKHLRPVTSIAVLRIAFRIMGPLLPRLANAHPLFSKTLSLLLTIMVDVFGKNSQPLAPVEASEIVDLIDFLHHVIHYEGQAGPVQASSKPRTEVLALLGRAADSLRPDMQRLLSHLKTDVNCSIYAATHPKLAQNTS
Length1649
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.08
Grand average of hydropathy-0.094
Instability index46.66
Isoelectric point6.73
Molecular weight184949.28
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00899
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.17|      14|      16|     229|     243|       1
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  229-  243 (22.16/17.77)	SPLPSVHcIGSPAQS
  248-  261 (26.01/14.77)	SPMKSPD.VGGGQQS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.94|      10|      15|    1380|    1389|       3
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 1380- 1389 (19.77/11.01)	SPSGGSNDSF
 1397- 1406 (20.16/11.39)	SPSGMNTSNF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.98|      10|      16|     198|     207|       5
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  198-  207 (16.33/ 8.79)	TVSSATLTQS
  215-  224 (17.64/10.11)	TVTNPTNFQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.28|      21|      22|     904|     924|       7
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  904-  924 (36.28/27.44)	RGITDFDHLLYLPTMLEQILA
  927-  947 (37.00/28.17)	QHAWSEKTLRYFPSVLRDALA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.05|      15|      17|     529|     544|       8
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  529-  544 (23.84/19.32)	LILDIN.CwQEWLTFSD
  547-  562 (23.21/11.98)	FFLAKNgC.LDFVDFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.36|      14|      16|    1005|    1019|       9
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 1005- 1019 (20.36/17.76)	VLMLGHPESInSANL
 1022- 1035 (24.01/15.15)	VLREFSPEEV.TANI
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.63|      18|      22|     331|     352|      11
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  335-  352 (34.43/23.83)	I...EWLHSCLDVIWLLVEDD
  356-  376 (25.20/ 7.87)	IpfyELVRSNLQVIENIPDDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.74|      62|     342|    1071|    1172|      12
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 1111- 1172 (111.28/100.74)	RVKLY.SMNRGQPEHWLLS.GTFKRVELQKALGNHL...SWKER.............FPTFFDDIAARLLPVIPLIIYRL
 1437- 1516 (88.46/33.08)	HVQLYmEAARVVKECWWLTdGKRSASELESAVSYALldpTWAAQdntstaignvvalLHSFFSNLPQEWLEGTHLIIKHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.46|      20|      23|     402|     424|      14
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  402-  424 (34.54/23.99)	HLHCPTFGTPRLFPQAMNnisGE
  428-  447 (37.93/19.17)	HMRYPAITYPSVLGEPLH...GE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.07|      20|     342|     310|     334|      15
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  310-  334 (34.48/30.82)	INWDQKQQG..IDEfdsarYW....KPDKAL
  652-  677 (28.59/14.91)	LNNEQLQKGkqIDE.....WWrqttKGERTL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00899 with Med23 domain of Kingdom Viridiplantae
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