<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00898

Description Uncharacterized protein
SequenceMATVVATAAGERHLIVAVEGTAAVGPFWHTVLSDYLEKVIRSFCANDSTGQKLSAANVNLSLVTFNSHGPYSACLVQRSGWTRDIDVFFEWLSAIPFGGGGFNDAAIAEGLAEALMMISSKNGNQTQQNLDSHKHCILVAASNPYPLPTPVYRPRQNVEQSENTEIQSDGRLSDAETVAKSFAQCNISLSVICPKQLPKLKAIYNAGKRNPRAPDPPVDNGKNPHFLVLISENFIEARVALGRSGMTNISTQSPVKVDAASVASVSGPPSTSVQSANAGAVVNRQPGSVGTIPPAVVKIEPTTVTSMSGPTFPHVPSVPRASSQPIPNLQTSSPISASQDMVSTNENIQEMKPIVSSMTQSLRPVGAAPANVRILNDVAQARQAFGGGTSMGLQSMGGTPILSNMISSGMTSSIPAAQTLISSGQSGVTSVSGSAPVAGNAQGAQNPAPASFPTTTSNVSGSSNLSMSQPLSNHQGGVSMGQTVPSMSQGNLTGTQMVQSGMTMNQNMMGGIGASGIPSGTGTMIPTPGMSQQVQPGMQPLGVNNNAGANMPLPQQTSNTLPSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIPSQQQQQQLQQQQHQQLQAQQHPQLQQQQLQQLQQQQSLPQLQQQQQHMPQLQQQQQPLAQLQQQPLAQMQQQQPLMPLQQQQQMPQLQQQQQMPQLQQPQQQQQMVGTGLGQPYMQGPGRSPLMSQGQVSSQGPPTMSGGPFMS
Length835
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.04
Grand average of hydropathy-0.353
Instability index63.92
Isoelectric point9.08
Molecular weight88949.72
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00898
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.73|      25|      25|     693|     717|       1
---------------------------------------------------------------------------
  687-  711 (47.49/12.79)	KPQIPSQQQQQQLQQQQH.QQLQAQ...Q
  712-  736 (42.49/10.70)	HPQLQQQQ.LQQLQQQQSlPQLQQQ...Q
  785-  811 (34.75/ 7.47)	.PQLQQPQQQQQMVGTGL.GQPYMQgpgR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     359.94|      67|      69|     365|     431|       3
---------------------------------------------------------------------------
  228-  290 (55.57/17.76)	..........VLISENFIEARVALGrsGMTN.................ISTQS.....PVKVD.......A.ASVASVSG..PPS..TS..VQS.AnagavvnrQPGSVG
  291-  344 (67.31/23.10)	TIP..P..AVVKI................EP.................TTVTSMSG..PTFPH.......V.PSVPRASSqpIPNLQTSspISA.S........QDMVST
  364-  430 (114.46/44.58)	PVGAAP..ANVRILNDVAQARQAFG..GGTS.................MGLQSMGGT.PILSN.......M.ISSGMTSS..IPAAQTL..ISS.G........QSGVTS
  431-  519 (67.53/23.20)	VSGSAPvaGNAQGAQNPAPA..SFP..TTTSnvsgssnlsmsqplsnhQGGVSMGQTvPSMSQgnltgtqM.VQSGMT......MNQNM..MGGiG........ASGIPS
  520-  565 (55.07/17.53)	GTGT........MIPTPGMSQQVQP..GMQP.................LGVNNNAG.....AN.......MpLPQQTSNT..LPSAQ.......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.19|      44|      70|     100|     151|       5
---------------------------------------------------------------------------
  100-  151 (68.81/59.28)	GGFNDA.AIAEGLAE...ALMMISSKNGNQTQQNLDSHKHcilvaasNPY.PLPtPV
  170-  218 (64.38/38.08)	GRLSDAeTVAKSFAQcniSLSVICPKQLPKLKAIYNAGKR.......NPRaPDP.PV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00898 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GMTNISTQSPVKVDAASVASVSGPPSTSVQSANAGAVVNRQPG
2) GTIPPAVVKIEPTTVTSMSGPTFPHVPSVPRASSQPIPNLQTSSPISASQDMVSTNENIQEMKPIVSSMTQSLR
3) LPQLQQQQQHMPQLQQQQQPLAQLQQQPLAQMQQQQPLMPLQQQQQMPQLQQQQQMPQLQQPQQQQQMVGTGLGQPYMQGPGRSPLMSQGQVSSQGPPTMSGGPFMS
4) SIPAAQTLISSGQSGVTSVSGSAPVAGNAQGAQNPAPASFPTTTSNVSGSSNLSMSQPLSNHQGGVSMGQTVPSMSQGNLTGTQMVQSGMTMNQNMMGGIGASGIPSGTGTMIPTPGMSQQVQPGMQPLGVNNNAGANMPLPQQTSNT
245
290
729
413
287
363
835
560










Molecular Recognition Features






MoRF SequenceStartStop




NANANA