<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00897

Description Uncharacterized protein
SequenceMNDSNPSPHPSKDSAAAAPAPEEEEEEEEESSSSAITIISASVSVEASKGPAEKPEITAGEEEPQPMAVSEKEAAAVAGPPDDHMDVDNVSPATVFCIKLKQPRSNLLHKMSVPELCRYFSAVAWCGKLNAIACASETCARIPSSNANPPFWIPIHIVIPERPTECAVFNVVADSPRDLVQFMEWSPTSCPRALLIANFHGRITIWTQPSQGPACIGRDASSWHLEYEWRQDIAVATKWLSGVSPYRWLSSRSANSGKSTFEEKFLSQQPEAPAGWPNFLCVCSVFSSGSVQLHWSQWPPTQSGTPSKWFCTSKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTVVVWEVTAGPWNGFQASPKASVGNGVPPSVNPPSWDGFAPLAAYLFSWQEYLLLEAKQGRKYTEQDYNEMVTLHCSPVSNFSAYVSPEAAGQSASATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSVTGWRVQRWEATVENVVLHPIFGNPSSTFGGEAPKQTVWVNKGMKCTPATNDFRSPQSAAAVPSPDGRNSSDPGVEVTKTVGFDHFDLPSDVRTLARIVYSSHGGEIAVAFLRGGVNVFSGASFTHVDKYQIDVGAAIAAPAFSSTSCCSASVWHDTSKDCTMLKIIRVLPPATSSSQLKANSVTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTHHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALLSEPWHASGEALSVLDPEAMAVEPALVPIIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGGSRNMVTSPTQSSASPTVTQGAQGGTASSTGSTQMQAWVQGAIAKISSTADTVPNSAPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFLFWRTQVPRLYGSSQRNADAAAQKPQPNNSGRVEESNSVPAKPGSAMIRGEEAQGPRAGQLAAAAKGPEEVPSSRSRLGSGNAGQGYTFEEVRVLFRILMDLCRRTAGLAHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQFMPRPRGADAAGLLLRELELHPPAEEWHRKNMFGGPWSDPEDIGPVNDSVRLSPSADLHDGTSSENCDVYYGAHGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFDLPRATSTGNQNERAVWWISRWAHGCPMCGGTWVRVV
Length1277
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.08
Grand average of hydropathy-0.178
Instability index48.06
Isoelectric point5.76
Molecular weight137264.07
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00897
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.00|      21|      21|     841|     861|       1
---------------------------------------------------------------------------
  443-  462 (35.43/17.11)	ASATTTWGS.GVTAVAFDPTR
  841-  861 (36.62/17.93)	ASHAVTAGTGGSRNMVTSPTQ
  864-  884 (36.95/18.15)	ASPTVTQGAQGGTASSTGSTQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     267.73|      60|     112|     887|     947|       2
---------------------------------------------------------------------------
  124-  174 (70.10/33.40)	AWCgkLNAIACASETCARIPSSNANP...P.FWIPI.HIVIPERPTECAVfNVVAD........
  887-  946 (110.38/58.42)	AWV..QGAIAKISSTADTVPNSAPNPISGPSSFMPI.SINTGTFPGTPAV.RLIGDCHFLHRLC
  999- 1056 (87.25/43.93)	AMI..RGEEAQ.GPRAGQLAAAAKGPEEVPSSRSRLgSGNAGQGYTFEEV.RVL..FRILMDLC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.21|      20|     112|     422|     441|       3
---------------------------------------------------------------------------
  422-  441 (37.81/25.72)	LHCSPVSN.F....SAYVSPEAAGQ
  531-  555 (28.39/16.99)	MKCTPATNdFrspqSAAAVPSPDGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.09|      23|      23|     341|     363|       4
---------------------------------------------------------------------------
  341-  363 (43.46/22.88)	GVPIVNPSTVVVWEVTAGPWNGF
  365-  387 (43.63/23.00)	ASPKASVGNGVPPSVNPPSWDGF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.06|      16|      19|     771|     786|       5
---------------------------------------------------------------------------
  771-  786 (26.21/16.12)	GIESALVNPSALLSEP
  791-  806 (26.85/16.71)	GEALSVLDPEAMAVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.59|      21|     272|     208|     228|       6
---------------------------------------------------------------------------
  208-  228 (40.59/23.05)	QPSQGPACIGRDASSWHLEYE
  481-  501 (40.00/22.60)	DPDEGPSVTGWRVQRWEATVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.72|      29|     921|       7|      35|      11
---------------------------------------------------------------------------
    7-   35 (48.90/26.03)	SPHPSKDSAAAAPAPEEEEEEEEESSSSA
  966-  994 (49.81/26.65)	SSQRNADAAAQKPQPNNSGRVEESNSVPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     218.19|      71|    1051|      45|     122|      12
---------------------------------------------------------------------------
   45-  122 (109.26/84.31)	VEASKGPAEKPEITAGEEEPQPMAVSEKEaaavAGPPDD..H...M......DVDNVSPATVfCIKLkQPRSNlLHKMSVPELCR.YFSA
 1094- 1176 (108.93/64.04)	VEASLGPHMQFMPRPRGADAAGLLLRELE....LHPPAEewHrknMfggpwsDPEDIGPVND.SVRL.SPSAD.LHDGTSSENCDvYYGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.20|      16|     529|     682|     697|      15
---------------------------------------------------------------------------
  682-  697 (37.00/19.22)	WWSLLVGVDWWDAVGC
 1219- 1233 (31.77/15.49)	WKTGLEGV.WYKCIRC
 1257- 1266 (25.42/10.97)	WW.....ISRW.AHGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.56|      11|      29|     558|     570|      17
---------------------------------------------------------------------------
  558-  570 (15.63/14.51)	SDPGVEVtkTVGF
  588-  598 (19.93/10.96)	SSHGGEI..AVAF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00897 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GTGGSRNMVTSPTQSSASPTVTQGAQGGTASSTG
2) MNDSNPSPHPSKDSAAAAPAPEEEEEEEEESSSSAITIIS
3) SSQRNADAAAQKPQPNNSGRVEESNSVPAKPGSAMIRGEEAQGPRAGQLAAAAKGPEEVPSSRSRLGS
4) SVSVEASKGPAEKPEITAGEEEPQPMAVSEKEAAAVAGPPDDHMD
848
1
966
42
881
40
1033
86










Molecular Recognition Features






MoRF SequenceStartStop




1) PSPHPSKDSAAAAPAPEEEEEEEEESSSSAITIISASV
6
43