<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00896

Description Uncharacterized protein
SequenceMEEVSASYDQCSYWDAVLELTKLAQENGSDPLLWAIQVSANMSSSGVSFPSFELANFLVSYIFWENNVPITWKFLEKALVLKIVPSLPVLALLSTRVIPNRHSCPAAFRLYMELLKTHAFEFESHSKLPNYQKIRKSISNIIHSSQIFDVQADEPGVLVIQIVFSIVWQLLDASLDDEGLLKLTPEKNSRWPTKLQDMEIDGYKNSDVMRLENKERLKNANTVMAIELIGKFLQNKVTSRIIYLARQSMRRPWGGFVQRIQLLVSHSTALRNSKLLTSETLLKLIHNSPKLMLQRPRRCAPEELPGVGHFKSLAYRSGCRVGLSCASLWLPLDLILEDAMDNSQVNATSSVETVTGLVKALQAINGSTWHETFLGLWKAALRLVQRERDPIEGPVPRLDTRLCMLLSITTLVVADLIEEEESAPTDEIDVDLDSQCKQTTGNRRGDLASSLQNLGDFEMLLTPPHSVIPAANQAAAKAMMFVSGINVGSAYFESISMTDIPTNCSGNLRHVIVEACIARNLLDTSAYFWPGYASGSINQLPHTVPTQIPSWSSFMKGAPLTPLLINALVSVPASSLAELEKIFETAVKGSDDEKIAAARILSGASLVRGWNIQEHTAYFITRLLSPPAPADYSGDDSHLIGFGPMLNVLLVGIAPVDCVQIFSLHGLVPQLACSLMTICEVFGSCIPNISWTLTTGEEISAHAVFSNAFALLLKLWRFNHPPIEYGVGDLPPVGSQLTPEYLLLVRNSLLVSSGNLLKDPNRRRLATVASASYLKPIFVDSFPKLKVWYRQHLACIASPLSGLVHGTPVHQTVDALLNMMFRKISRGSQSATSITSGSSSSSGPGSEDTLPRPILPAWDILEAVPFVVDAALTSCAHGILSPRELCTGLKDLADYLPASLATIVSYFSAEVTRGIWKPVFMNGTDWPSPAANLFYVEEQIKKILAATGVDVPSLAAGGNSPGTLPLPLAAFVSLTITYKLDKASQRFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWSDFLVFSASRTVFLHNNDAVVQLLKSCFSVTLGLNTTSVTSNGGVGSLLGHGFGSHMYGGISPVAPGILYLRVYRSIRDIMFMREEIVSLLMQSVKDIACSGLPVEQREKLKSAKNGKYGHVSLDTIMIKVKLAASLGASLAWLTGGLGLMQSLIKETLPSWFLSAHPSDQEGASTMGVPMLQGYALAYFTVFCGAHAWGLDAISSSSKRRPKVLREHLEFVASVLDGQISLGCDPATWRAYVMELLSLMVDCFSSWMLEVDVMLLKRLGEGLRKWNEEELALALLCLGGAGTIGAAAELIIDTDL
Length1327
PositionTail
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.08
Grand average of hydropathy0.167
Instability index40.48
Isoelectric point6.23
Molecular weight144829.97
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00896
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.65|      22|     458|     276|     298|       1
---------------------------------------------------------------------------
  276-  298 (35.52/27.32)	LTSETLLkLIHN....SPKLMLQRPRR
  737-  762 (34.13/21.08)	LTPEYLL.LVRNsllvSSGNLLKDPNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.50|      39|     373|     514|     559|       7
---------------------------------------------------------------------------
  514-  557 (55.54/53.29)	EACIArnLLDTSAYFwPGYASGSINQLPHTVPTQIpsWSS.FMKG
  884-  923 (61.97/32.44)	ELCTG..LKDLADYL.PASLATIVSYFSAEVTRGI..WKPvFMNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.77|      14|     458|     172|     188|       8
---------------------------------------------------------------------------
  172-  188 (17.66/17.94)	DASLDDeglLKLTPEKN
  192-  205 (25.11/15.15)	PTKLQD...MEIDGYKN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00896 with Med33 domain of Kingdom Viridiplantae
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