<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00895

Description Uncharacterized protein
SequenceMAAKGEGKAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRYSDPSVQADMRHWPFKVIAGPGDKPMMVVRYKGEEKHFAPEEISSMVLTKMKEVAESFLGQTVKNAVITVPAYFNDSQRQATKDAGAIAAINVMRIINEPTAAAIAYGLDKKGSRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKNKKDISGNARALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDAKVDKSHVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILGGETDQKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERPMTKDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKGEIERMVQEAERYKAEDEAVKKKVEAKNSLENYAYNMKNTVRDEKFAGKLDPSDKQKIEKAIDEAIEWLDGNQLAEVDEFEDKQKELEALCNPIIAKMYQGAGGDVPMGGGAADMPGAGRGTADSGSNGPGPKIEEVD
Length656
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.06
Grand average of hydropathy-0.435
Instability index30.34
Isoelectric point5.35
Molecular weight71825.62
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00895
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.33|      34|      41|     316|     356|       1
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  316-  356 (50.23/44.75)	FR.....KCMEPVEKCLRDAKVdkshvhDVVLVGGSTRiPKVQQLL
  360-  398 (52.09/29.44)	FNgkelcKSINPDEAVAYGAAV......QAAILGGETD.QKVQDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.00|      18|      21|      38|      55|       2
---------------------------------------------------------------------------
   16-   33 (19.59/ 9.97)	....TTYSCVGVWQNDRveIIP
   38-   55 (32.67/21.03)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.74/14.32)	NQvaMNPQNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.78|      47|      53|     475|     527|       4
---------------------------------------------------------------------------
  475-  527 (69.73/59.16)	R.GVPQINVCFDIDANGilnvSAEDKTAGVKNkiTITNDK..GRL...SKGEIERMVQE
  530-  582 (62.05/38.59)	RyKAEDEAVKKKVEAKN....SLENYAYNMKN..TVRDEKfaGKLdpsDKQKIEKAIDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.53|      32|     484|     102|     135|       7
---------------------------------------------------------------------------
  102-  135 (49.97/43.04)	GDKPMMVVRYKGEEKHFapEEISSMVLTKMKEVA
  589-  620 (52.55/37.57)	GNQLAEVDEFEDKQKEL..EALCNPIIAKMYQGA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00895 with Med37 domain of Kingdom Viridiplantae
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